1 sCache_like#1
70-131 aa · 62 aa · 14.0% of protein
Raw token
sCache_like:70:0.00000000543:131:62:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMGNA_RS04825
Histidine kinase, Classic
Mediterraneibacter gnavus ATCC 29149 · GCF_000169475
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169475#RUMGNA_RS04825Stable P2CS identifier used across views.
GenomeGCF_000169475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 442 aa (53.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
218-284 aa · 67 aa · 15.2% of protein
Raw token
HisKA:218:2.48e-18:284:67:643 HATPase_c#3
328-436 aa · 109 aa · 24.7% of protein
Raw token
HATPase_c:328:6.97e-25:436:109:109- Raw architecture: sCache_like:70:0.00000000543:131:62:114#HisKA:218:2.48e-18:284:67:64#HATPase_c:328:6.97e-25:436:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169475::NZ_AAYG02000009.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span172044-174042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMGNA_01098RefSeq proteinWP_004841681.1
Context group ID
GCF_000169475::NZ_AAYG02000009.1::G00042Context members
RUMGNA_RS04820RUMGNA_RS04825
Partner locus tags
RUMGNA_RS04820RUMGNA_RS04825
Partner old locus tags
RUMGNA_01097RUMGNA_01098
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841681.1Primary protein accession used for annex mappings.
UniProt accessionA7B0M2Primary UniProt accession resolved in the annex database.
UniProt IDA7B0M2_MEDG7Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMGNA_RS04825Primary locus identifier stored in the genes table.
Old locus tagRUMGNA_01098Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAYG02000009.1Sequence record reported by the local genomic context database.
Genomic interval172 714-174 042 nt1 329 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span172 044-174 042 ntGCF_000169475::NZ_AAYG02000009.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169475::NZ_AAYG02000009.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAYG02000009.1All displayed genes belong to this local TCS context.
Neighborhood span172 044-174 042 nt1 999 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 044 nt174 042 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMGNA_RS04820GCF_000169475#RUMGNA_RS04820
RROmpR
172 044-172 724 nt · Forward (+)
RUMGNA_RS04825GCF_000169475#RUMGNA_RS04825
HKClassicCurrent focus
172 714-174 042 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS04825The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2051499
Simplified PFAM architecture for HKOC_2051499
PFAM domain coverage: 242 / 442 aa (54.8%)
1 aa442 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[64-131] | HisKA[218-284] | HATPase_c[331-437]
- Domain count: 3
- Matched identifier: HKOC_2051499
- Positioned domains: sCache_like 64-131 ; HisKA 218-284 ; HATPase_c 331-437
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_000169475
AssemblyASM16947v1 · Contighaploid
Genome composition3 501 911 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key