1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:1.21e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RUMGNA_RS03170
Response regulator OmpR family
Mediterraneibacter gnavus ATCC 29149 · GCF_000169475
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169475#RUMGNA_RS03170Stable P2CS identifier used across views.
GenomeGCF_000169475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:2.91e-24:223:78:77- Raw architecture: Response_reg:4:1.21e-32:114:111:111#Trans_reg_C:148:2.91e-24:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169475::NZ_AAYG02000006.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49525-51242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRUMGNA_00727RefSeq proteinWP_039959333.1
Context group ID
GCF_000169475::NZ_AAYG02000006.1::G00044Context members
RUMGNA_RS03165RUMGNA_RS03170
Partner locus tags
RUMGNA_RS03165RUMGNA_RS03170
Partner old locus tags
RUMGNA_00726RUMGNA_00727
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039959333.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT2V083Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT2V083_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRUMGNA_RS03170Primary locus identifier stored in the genes table.
Old locus tagRUMGNA_00727Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAYG02000006.1Sequence record reported by the local genomic context database.
Genomic interval50 553-51 242 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span49 525-51 242 ntGCF_000169475::NZ_AAYG02000006.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169475::NZ_AAYG02000006.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAYG02000006.1All displayed genes belong to this local TCS context.
Neighborhood span49 525-51 242 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 525 nt51 242 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RUMGNA_RS03165GCF_000169475#RUMGNA_RS03165
HKClassic
49 525-50 556 nt · Reverse (-)
RUMGNA_RS03170GCF_000169475#RUMGNA_RS03170
RROmpRCurrent focus
50 553-51 242 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS03170The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247024
Simplified PFAM architecture for RROC_1247024
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1247024
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS03170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 470 · GCF_000169475
AssemblyASM16947v1 · Contighaploid
Genome composition3 501 911 bp · 43,0% GCMediterraneibacter gnavus ATCC 29149
Signal transduction countsGenes 81 · HK 39 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key