1 HAMP#1
167-236 aa · 70 aa · 15.0% of protein
Raw token
HAMP:167:6.62e-16:236:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC53638_RS20130
Histidine kinase, Classic
Escherichia coli 53638 · GCF_000167915
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000167915#EC53638_RS20130Stable P2CS identifier used across views.
GenomeGCF_000167915Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 467 aa (53.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
240-304 aa · 65 aa · 13.9% of protein
Raw token
HisKA:240:0.0000000000000114:304:65:643 HATPase_c#3
349-461 aa · 113 aa · 24.2% of protein
Raw token
HATPase_c:349:9.46e-29:461:113:109- Raw architecture: HAMP:167:6.62e-16:236:70:69#HisKA:240:0.0000000000000114:304:65:64#HATPase_c:349:9.46e-29:461:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000167915::NZ_AAKB02000001.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3971418-3973540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEc53638_4076RefSeq proteinWP_000675150.1
Context group ID
GCF_000167915::NZ_AAKB02000001.1::G00030Context members
EC53638_RS20125EC53638_RS20130
Partner locus tags
EC53638_RS20125EC53638_RS20130
Partner old locus tags
Ec53638_4075Ec53638_4076
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000675150.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FPP4Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FPP4_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC53638_RS20130Primary locus identifier stored in the genes table.
Old locus tagEc53638_4076Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAKB02000001.1Sequence record reported by the local genomic context database.
Genomic interval3 972 137-3 973 540 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 971 418-3 973 540 ntGCF_000167915::NZ_AAKB02000001.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000167915::NZ_AAKB02000001.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAKB02000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 971 418-3 973 540 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 971 418 nt3 973 540 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC53638_RS20125GCF_000167915#EC53638_RS20125
RROmpR
3 971 418-3 972 140 nt · Reverse (-)
EC53638_RS20130GCF_000167915#EC53638_RS20130
HKClassicCurrent focus
3 972 137-3 973 540 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001816285#IU10_RS03765Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1620611
Simplified PFAM architecture for HKOC_1620611
PFAM domain coverage: 229 / 480 aa (47.7%)
1 aa480 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[240-304] | HATPase_c[349-460]
- Domain count: 3
- Matched identifier: HKOC_1620611
- Positioned domains: HAMP 184-235 ; HisKA 240-304 ; HATPase_c 349-460
Cluster members and taxonomy
Representative gene: GCF_001816285#IU10_RS03765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 344 610 · GCF_000167915
AssemblyASM16791v2 · Contighaploid
Genome composition5 371 790 bp · 51,0% GCEscherichia coli 53638
Signal transduction countsGenes 62 · HK 29 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key