1 Response_reg#1
13-122 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:13:6.41e-30:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC53638_RS20125
Response regulator OmpR family
Escherichia coli 53638 · GCF_000167915
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000167915#EC53638_RS20125Stable P2CS identifier used across views.
GenomeGCF_000167915Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:156:2.61e-29:232:77:77- Raw architecture: Response_reg:13:6.41e-30:122:111:111#Trans_reg_C:156:2.61e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000167915::NZ_AAKB02000001.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3971418-3973540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEc53638_4075RefSeq proteinWP_000137877.1
Context group ID
GCF_000167915::NZ_AAKB02000001.1::G00030Context members
EC53638_RS20125EC53638_RS20130
Partner locus tags
EC53638_RS20125EC53638_RS20130
Partner old locus tags
Ec53638_4075Ec53638_4076
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000137877.1Primary protein accession used for annex mappings.
UniProt accessionD3GZE3Primary UniProt accession resolved in the annex database.
UniProt IDD3GZE3_ECO44Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC53638_RS20125Primary locus identifier stored in the genes table.
Old locus tagEc53638_4075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAKB02000001.1Sequence record reported by the local genomic context database.
Genomic interval3 971 418-3 972 140 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 971 418-3 973 540 ntGCF_000167915::NZ_AAKB02000001.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000167915::NZ_AAKB02000001.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAKB02000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 971 418-3 973 540 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 971 418 nt3 973 540 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC53638_RS20125GCF_000167915#EC53638_RS20125
RROmpRCurrent focus
3 971 418-3 972 140 nt · Reverse (-)
EC53638_RS20130GCF_000167915#EC53638_RS20130
HKClassic
3 972 137-3 973 540 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0881919
Simplified PFAM architecture for RROC_0881919
PFAM domain coverage: 186 / 240 aa (77.5%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0881919
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000005845#b2079
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 344 610 · GCF_000167915
AssemblyASM16791v2 · Contighaploid
Genome composition5 371 790 bp · 51,0% GCEscherichia coli 53638
Signal transduction countsGenes 62 · HK 29 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key