1 HAMP#1
165-234 aa · 70 aa · 15.3% of protein
Raw token
HAMP:165:0.000000000000938:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC53638_RS09520
Histidine kinase, Classic
Escherichia coli 53638 · GCF_000167915
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000167915#EC53638_RS09520Stable P2CS identifier used across views.
GenomeGCF_000167915Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 457 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-299 aa · 62 aa · 13.6% of protein
Raw token
HisKA:238:7.69e-17:299:63:643 HATPase_c#3
345-453 aa · 109 aa · 23.9% of protein
Raw token
HATPase_c:345:5.67e-30:453:110:109- Raw architecture: HAMP:165:0.000000000000938:234:70:69#HisKA:238:7.69e-17:299:63:64#HATPase_c:345:5.67e-30:453:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000167915::NZ_AAKB02000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1867167-1869235Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEc53638_1908RefSeq proteinWP_000580431.1
Context group ID
GCF_000167915::NZ_AAKB02000001.1::G00014Context members
EC53638_RS09515EC53638_RS09520
Partner locus tags
EC53638_RS09515EC53638_RS09520
Partner old locus tags
Ec53638_1907Ec53638_1908
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000580431.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC53638_RS09520Primary locus identifier stored in the genes table.
Old locus tagEc53638_1908Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAKB02000001.1Sequence record reported by the local genomic context database.
Genomic interval1 867 862-1 869 235 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 867 167-1 869 235 ntGCF_000167915::NZ_AAKB02000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000167915::NZ_AAKB02000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAKB02000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 867 167-1 869 235 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 867 167 nt1 869 235 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC53638_RS09515GCF_000167915#EC53638_RS09515
RROmpR
1 867 167-1 867 865 nt · Forward (+)
EC53638_RS09520GCF_000167915#EC53638_RS09520
HKClassicCurrent focus
1 867 862-1 869 235 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000167915#EC53638_RS09520The current gene is the representative for this cluster.
PFAM architectureCpxA_peri + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1873510
Simplified PFAM architecture for HKOC_1873510
PFAM domain coverage: 293 / 457 aa (64.1%)
1 aa457 aa
CpxA_periHAMPHisKAHATPase_c
- Simplified architecture: CpxA_peri + HAMP + HisKA + HATPase_c
- Raw architecture: CpxA_peri[82-150] | HAMP[181-233] | HisKA[239-299] | HATPase_c[345-454]
- Domain count: 4
- Matched identifier: HKOC_1873510
- Positioned domains: CpxA_peri 82-150 ; HAMP 181-233 ; HisKA 239-299 ; HATPase_c 345-454
Cluster members and taxonomy
Representative gene: GCF_000167915#EC53638_RS09520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 344 610 · GCF_000167915
AssemblyASM16791v2 · Contighaploid
Genome composition5 371 790 bp · 51,0% GCEscherichia coli 53638
Signal transduction countsGenes 62 · HK 29 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key