1 Response_reg#1
7-80 aa · 74 aa · 28.2% of protein
Raw token
Response_reg:7:0.0000036:80:75:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBMN68_RS01640
Response regulator, unclassified
Bifidobacterium longum subsp. longum BBMN68 · GCF_000166315
ClassRRTypeunclassifiedLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000166315#BBMN68_RS01640Stable P2CS identifier used across views.
GenomeGCF_000166315Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage74 / 262 aa (28.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:0.0000036:80:75:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000166315::NC_014656.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span395619-396407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBMN68_324RefSeq proteinWP_013410794.1
Context group ID
GCF_000166315::NC_014656.1::G00004Context members
BBMN68_RS01640
Partner locus tags
BBMN68_RS01640
Partner old locus tags
BBMN68_324
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_013410794.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBMN68_RS01640Primary locus identifier stored in the genes table.
Old locus tagBBMN68_324Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_014656.1Sequence record reported by the local genomic context database.
Genomic interval395 619-396 407 nt789 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span395 619-396 407 ntGCF_000166315::NC_014656.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000166315::NC_014656.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_014656.1All displayed genes belong to this local TCS context.
Neighborhood span395 619-396 407 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
395 619 nt396 407 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBMN68_RS01640GCF_000166315#BBMN68_RS01640
RRunclassifiedCurrent focus
395 619-396 407 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166315#BBMN68_RS01640The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_0644143
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000166315#BBMN68_RS01640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 890 402 · GCF_000166315
AssemblyASM16631v1 · Complete Genomehaploid
Genome composition2 265 943 bp · 60,0% GCBifidobacterium longum subsp. longum BBMN68
Signal transduction countsGenes 26 · HK 11 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key