1 Response_reg#1
12-124 aa · 113 aa · 46.5% of protein
Raw token
Response_reg:12:7.38e-17:124:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0219_RS05535
Response regulator LytTR family
Clostridioides difficile NAP07 · GCF_000164655
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164655#HMPREF0219_RS05535Stable P2CS identifier used across views.
GenomeGCF_000164655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 243 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
144-224 aa · 81 aa · 33.3% of protein
Raw token
LytTR:144:3.41e-18:224:87:98- Raw architecture: Response_reg:12:7.38e-17:124:117:111#LytTR:144:3.41e-18:224:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164655::NZ_GG770749.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span232826-233557Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0219_1547RefSeq proteinWP_003423659.1
Context group ID
GCF_000164655::NZ_GG770749.1::G00013Context members
HMPREF0219_RS05535
Partner locus tags
HMPREF0219_RS05535
Partner old locus tags
HMPREF0219_1547
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423659.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3H492Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3H492_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0219_RS05535Primary locus identifier stored in the genes table.
Old locus tagHMPREF0219_1547Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG770749.1Sequence record reported by the local genomic context database.
Genomic interval232 826-233 557 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span232 826-233 557 ntGCF_000164655::NZ_GG770749.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164655::NZ_GG770749.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG770749.1All displayed genes belong to this local TCS context.
Neighborhood span232 826-233 557 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 826 nt233 557 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0219_RS05535GCF_000164655#HMPREF0219_RS05535
RRLytTRCurrent focus
232 826-233 557 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164655#HMPREF0219_RS05535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824839
Simplified PFAM architecture for RROC_0824839
PFAM domain coverage: 197 / 243 aa (81.1%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[12-123] | LytTR[146-230]
- Domain count: 2
- Matched identifier: RROC_0824839
- Positioned domains: Response_reg 12-123 ; Response_reg 12-123 ; LytTR 146-230 ; LytTR 146-230
Cluster members and taxonomy
Representative gene: GCF_000164655#HMPREF0219_RS05535
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 294 total members. Page 1 / 6.
GCF_000164655#HMPREF0219_RS05535 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 258 · GCF_000164655
AssemblyASM16465v1 · Scaffoldhaploid
Genome composition3 905 466 bp · 28,5% GCClostridioides difficile NAP07
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key