1 Response_reg#1
5-104 aa · 100 aa · 52.4% of protein
Raw token
Response_reg:5:2.6e-31:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0219_RS04890
Response regulator, AmiR_NasR family
Clostridioides difficile NAP07 · GCF_000164655
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164655#HMPREF0219_RS04890Stable P2CS identifier used across views.
GenomeGCF_000164655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 191 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:3.01e-20:186:49:49- Raw architecture: Response_reg:5:2.6e-31:104:100:111#ANTAR:138:3.01e-20:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164655::NZ_GG770749.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span372115-374092Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0219_1684RefSeq proteinWP_003423977.1
Context group ID
GCF_000164655::NZ_GG770749.1::G00016Context members
HMPREF0219_RS04890HMPREF0219_RS04885
Partner locus tags
HMPREF0219_RS04890HMPREF0219_RS04885
Partner old locus tags
HMPREF0219_1684HMPREF0219_1685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423977.1Primary protein accession used for annex mappings.
UniProt accessionD5Q483Primary UniProt accession resolved in the annex database.
UniProt IDD5Q483_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0219_RS04890Primary locus identifier stored in the genes table.
Old locus tagHMPREF0219_1684Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG770749.1Sequence record reported by the local genomic context database.
Genomic interval372 115-372 690 nt576 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span372 115-374 092 ntGCF_000164655::NZ_GG770749.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164655::NZ_GG770749.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG770749.1All displayed genes belong to this local TCS context.
Neighborhood span372 115-374 092 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
372 115 nt374 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0219_RS04890GCF_000164655#HMPREF0219_RS04890
RRAmiR_NasRCurrent focus
372 115-372 690 nt · Forward (+)
HMPREF0219_RS04885GCF_000164655#HMPREF0219_RS04885
HKClassic
372 683-374 092 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251125#QQO88_RS01710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2128965
Simplified PFAM architecture for RROC_2128965
PFAM domain coverage: 164 / 201 aa (81.6%)
1 aa201 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[15-125] | ANTAR[144-196]
- Domain count: 2
- Matched identifier: RROC_2128965
- Positioned domains: Response_reg 15-125 ; ANTAR 144-196
Cluster members and taxonomy
Representative gene: GCF_030251125#QQO88_RS01710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 258 · GCF_000164655
AssemblyASM16465v1 · Scaffoldhaploid
Genome composition3 905 466 bp · 28,5% GCClostridioides difficile NAP07
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key