1 Response_reg#1
3-113 aa · 111 aa · 45.5% of protein
Raw token
Response_reg:3:2.02e-29:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9551_RS15285
Response regulator LytTR family
Escherichia coli MS 196-1 · GCF_000164555
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164555#HMPREF9551_RS15285Stable P2CS identifier used across views.
GenomeGCF_000164555Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 244 aa (85.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-242 aa · 98 aa · 40.2% of protein
Raw token
LytTR:145:8.7e-41:242:98:98- Raw architecture: Response_reg:3:2.02e-29:113:113:111#LytTR:145:8.7e-41:242:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164555::NZ_GG774002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76436-78882Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9551_02030RefSeq proteinWP_001295458.1
Context group ID
GCF_000164555::NZ_GG774002.1::G00033Context members
HMPREF9551_RS15290HMPREF9551_RS15285
Partner locus tags
HMPREF9551_RS15290HMPREF9551_RS15285
Partner old locus tags
HMPREF9551_02029HMPREF9551_02030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001295458.1Primary protein accession used for annex mappings.
UniProt accessionD3H242Primary UniProt accession resolved in the annex database.
UniProt IDD3H242_ECO44Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9551_RS15285Primary locus identifier stored in the genes table.
Old locus tagHMPREF9551_02030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG774002.1Sequence record reported by the local genomic context database.
Genomic interval78 148-78 882 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 436-78 882 ntGCF_000164555::NZ_GG774002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164555::NZ_GG774002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774002.1All displayed genes belong to this local TCS context.
Neighborhood span76 436-78 882 nt2 447 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 436 nt78 882 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9551_RS15290GCF_000164555#HMPREF9551_RS15290
HKClassic
76 436-78 133 nt · Forward (+)
HMPREF9551_RS15285GCF_000164555#HMPREF9551_RS15285
RRLytTRCurrent focus
78 148-78 882 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0805937
Simplified PFAM architecture for RROC_0805937
PFAM domain coverage: 207 / 244 aa (84.8%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[146-242]
- Domain count: 2
- Matched identifier: RROC_0805937
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 146-242 ; LytTR 146-242
Cluster members and taxonomy
Representative gene: GCF_000005845#b2381
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 548 · GCF_000164555
AssemblyASM16455v1 · Scaffoldhaploid
Genome composition5 253 182 bp · 50,5% GCEscherichia coli MS 196-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key