1 Response_reg#1
4-116 aa · 113 aa · 51.8% of protein
Raw token
Response_reg:4:5.84e-38:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9551_RS02265
Response regulator, unclassified
Escherichia coli MS 196-1 · GCF_000164555
ClassRRTypeunclassifiedLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164555#HMPREF9551_RS02265Stable P2CS identifier used across views.
GenomeGCF_000164555Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 218 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 GerE#2
148-204 aa · 57 aa · 26.1% of protein
Raw token
GerE:148:8.72e-21:204:57:57- Raw architecture: Response_reg:4:5.84e-38:116:113:111#GerE:148:8.72e-21:204:57:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164555::NZ_GG774142.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span54759-55415Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9551_05129RefSeq proteinWP_000611335.1
Context group ID
GCF_000164555::NZ_GG774142.1::G00007Context members
HMPREF9551_RS02265
Partner locus tags
HMPREF9551_RS02265
Partner old locus tags
HMPREF9551_05129
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000611335.1Primary protein accession used for annex mappings.
UniProt accessionI6EJP8Primary UniProt accession resolved in the annex database.
UniProt IDI6EJP8_SHIBODisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9551_RS02265Primary locus identifier stored in the genes table.
Old locus tagHMPREF9551_05129Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG774142.1Sequence record reported by the local genomic context database.
Genomic interval54 759-55 415 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 759-55 415 ntGCF_000164555::NZ_GG774142.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164555::NZ_GG774142.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774142.1All displayed genes belong to this local TCS context.
Neighborhood span54 759-55 415 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 759 nt55 415 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9551_RS02265GCF_000164555#HMPREF9551_RS02265
RRunclassifiedCurrent focus
54 759-55 415 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1811972
Simplified PFAM architecture for RROC_1811972
PFAM domain coverage: 169 / 218 aa (77.5%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1811972
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000005845#b1914
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 548 · GCF_000164555
AssemblyASM16455v1 · Scaffoldhaploid
Genome composition5 253 182 bp · 50,5% GCEscherichia coli MS 196-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key