1 Response_reg#1
6-116 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:6:3.18e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9551_RS13410
Response regulator OmpR family
Escherichia coli MS 196-1 · GCF_000164555
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164555#HMPREF9551_RS13410Stable P2CS identifier used across views.
GenomeGCF_000164555Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:1.29e-28:226:77:77- Raw architecture: Response_reg:6:3.18e-35:116:111:111#Trans_reg_C:150:1.29e-28:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164555::NZ_GG774016.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20467-22580Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9551_02464RefSeq proteinWP_001188659.1
Context group ID
GCF_000164555::NZ_GG774016.1::G00024Context members
HMPREF9551_RS13410HMPREF9551_RS13405
Partner locus tags
HMPREF9551_RS13410HMPREF9551_RS13405
Partner old locus tags
HMPREF9551_02464HMPREF9551_02465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001188659.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0KTK5Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0KTK5_ECOLXDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9551_RS13410Primary locus identifier stored in the genes table.
Old locus tagHMPREF9551_02464Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG774016.1Sequence record reported by the local genomic context database.
Genomic interval20 467-21 156 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 467-22 580 ntGCF_000164555::NZ_GG774016.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164555::NZ_GG774016.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774016.1All displayed genes belong to this local TCS context.
Neighborhood span20 467-22 580 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 467 nt22 580 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9551_RS13410GCF_000164555#HMPREF9551_RS13410
RROmpRCurrent focus
20 467-21 156 nt · Forward (+)
HMPREF9551_RS13405GCF_000164555#HMPREF9551_RS13405
HKClassic
21 156-22 580 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010385#ECSE_RS24340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246202
Simplified PFAM architecture for RROC_1246202
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-116] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1246202
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000010385#ECSE_RS24340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 548 · GCF_000164555
AssemblyASM16455v1 · Scaffoldhaploid
Genome composition5 253 182 bp · 50,5% GCEscherichia coli MS 196-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key