1 Response_reg#1
4-113 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:4:1.54e-31:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9551_RS10605
Response regulator LytTR family
Escherichia coli MS 196-1 · GCF_000164555
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164555#HMPREF9551_RS10605Stable P2CS identifier used across views.
GenomeGCF_000164555Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 239 aa (86.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-238 aa · 96 aa · 40.2% of protein
Raw token
LytTR:143:2.91e-31:238:99:98- Raw architecture: Response_reg:4:1.54e-31:113:113:111#LytTR:143:2.91e-31:238:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164555::NZ_GG774041.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99000-101401Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9551_03137RefSeq proteinWP_000598641.1
Context group ID
GCF_000164555::NZ_GG774041.1::G00020Context members
HMPREF9551_RS10605HMPREF9551_RS10600
Partner locus tags
HMPREF9551_RS10605HMPREF9551_RS10600
Partner old locus tags
HMPREF9551_03137HMPREF9551_03138
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000598641.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FR34Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FR34_ECOLXDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9551_RS10605Primary locus identifier stored in the genes table.
Old locus tagHMPREF9551_03137Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG774041.1Sequence record reported by the local genomic context database.
Genomic interval99 000-99 719 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span99 000-101 401 ntGCF_000164555::NZ_GG774041.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164555::NZ_GG774041.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774041.1All displayed genes belong to this local TCS context.
Neighborhood span99 000-101 401 nt2 402 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 000 nt101 401 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9551_RS10605GCF_000164555#HMPREF9551_RS10605
RRLytTRCurrent focus
99 000-99 719 nt · Reverse (-)
HMPREF9551_RS10600GCF_000164555#HMPREF9551_RS10600
HKClassic
99 716-101 401 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905275
Simplified PFAM architecture for RROC_0905275
PFAM domain coverage: 203 / 239 aa (84.9%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[144-237]
- Domain count: 2
- Matched identifier: RROC_0905275
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; LytTR 144-237 ; LytTR 144-237
Cluster members and taxonomy
Representative gene: GCF_000005845#b2125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 548 · GCF_000164555
AssemblyASM16455v1 · Scaffoldhaploid
Genome composition5 253 182 bp · 50,5% GCEscherichia coli MS 196-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key