1 Response_reg#1
6-106 aa · 101 aa · 87.1% of protein
Raw token
Response_reg:6:5.64e-33:106:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9551_RS08990
Response regulator, CheY family
Escherichia coli MS 196-1 · GCF_000164555
ClassRRTypeCheYLength116 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164555#HMPREF9551_RS08990Stable P2CS identifier used across views.
GenomeGCF_000164555Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length116 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage101 / 116 aa (87.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa116 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:5.64e-33:106:101:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164555::NZ_GG774065.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9551_03517RefSeq proteinWP_001336251.1
Context group ID
GCF_000164555::NZ_GG774065.1::G00017Context members
HMPREF9551_RS08990
Partner locus tags
HMPREF9551_RS08990
Partner old locus tags
HMPREF9551_03517
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001336251.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9551_RS08990Primary locus identifier stored in the genes table.
Old locus tagHMPREF9551_03517Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG774065.1Sequence record reported by the local genomic context database.
Genomic interval1-350 nt350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-350 ntGCF_000164555::NZ_GG774065.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164555::NZ_GG774065.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774065.1All displayed genes belong to this local TCS context.
Neighborhood span1-350 nt350 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt350 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9551_RS08990GCF_000164555#HMPREF9551_RS08990
RRCheYCurrent focus
1-350 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_031452595#NQD92_RS20925Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2312571
Simplified PFAM architecture for RROC_2312571
PFAM domain coverage: 102 / 132 aa (77.3%)
1 aa132 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-107]
- Domain count: 1
- Matched identifier: RROC_2312571
- Positioned domains: Response_reg 6-107
Cluster members and taxonomy
Representative gene: GCF_031452595#NQD92_RS20925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 548 · GCF_000164555
AssemblyASM16455v1 · Scaffoldhaploid
Genome composition5 253 182 bp · 50,5% GCEscherichia coli MS 196-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key