1 HisKA#1
157-225 aa · 69 aa · 19.1% of protein
Raw token
HisKA:157:0.00000000000000684:225:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9551_RS0126470
Histidine kinase, Classic
Escherichia coli MS 196-1 · GCF_000164555
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000164555#HMPREF9551_RS0126470Stable P2CS identifier used across views.
GenomeGCF_000164555Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 361 aa (44.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
271-360 aa · 90 aa · 24.9% of protein
Raw token
HATPase_c:271:3.88e-22:360:91:109- Raw architecture: HisKA:157:0.00000000000000684:225:69:64#HATPase_c:271:3.88e-22:360:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000164555::NZ_GG774138.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1084Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000164555::NZ_GG774138.1::G00008Context members
HMPREF9551_RS0126470
Partner locus tags
HMPREF9551_RS0126470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000293262.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9551_RS0126470Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_GG774138.1Sequence record reported by the local genomic context database.
Genomic interval1-1 084 nt1 084 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-1 084 ntGCF_000164555::NZ_GG774138.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164555::NZ_GG774138.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG774138.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 084 nt1 084 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 084 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9551_RS0126470GCF_000164555#HMPREF9551_RS0126470
HKClassicCurrent focus
1-1 084 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164575#HMPREF9549_RS05315Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533715
Simplified PFAM architecture for HKOC_1533715
PFAM domain coverage: 177 / 490 aa (36.1%)
1 aa490 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[268-336] | HATPase_c[383-490]
- Domain count: 2
- Matched identifier: HKOC_1533715
- Positioned domains: HisKA 268-336 ; HATPase_c 383-490
Cluster members and taxonomy
Representative gene: GCF_000164575#HMPREF9549_RS05315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 548 · GCF_000164555
AssemblyASM16455v1 · Scaffoldhaploid
Genome composition5 253 182 bp · 50,5% GCEscherichia coli MS 196-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key