1 Response_reg#1
4-113 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:4:1.2e-21:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9534_RS02000
Response regulator OmpR family
Escherichia coli MS 69-1 · GCF_000164315
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000164315#HMPREF9534_RS02000Stable P2CS identifier used across views.
GenomeGCF_000164315Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:157:3.67e-27:233:77:77- Raw architecture: Response_reg:4:1.2e-21:113:111:111#Trans_reg_C:157:3.67e-27:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000164315::NZ_GG772472.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31126-33150Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9534_05126RefSeq proteinWP_001092504.1
Context group ID
GCF_000164315::NZ_GG772472.1::G00002Context members
HMPREF9534_RS02000HMPREF9534_RS01995
Partner locus tags
HMPREF9534_RS02000HMPREF9534_RS01995
Partner old locus tags
HMPREF9534_05126HMPREF9534_05127
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001092504.1Primary protein accession used for annex mappings.
UniProt accessionA0A0E0Y0A2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0E0Y0A2_ECO1CDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9534_RS02000Primary locus identifier stored in the genes table.
Old locus tagHMPREF9534_05126Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG772472.1Sequence record reported by the local genomic context database.
Genomic interval31 126-31 845 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 126-33 150 ntGCF_000164315::NZ_GG772472.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000164315::NZ_GG772472.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG772472.1All displayed genes belong to this local TCS context.
Neighborhood span31 126-33 150 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 126 nt33 150 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9534_RS02000GCF_000164315#HMPREF9534_RS02000
RROmpRCurrent focus
31 126-31 845 nt · Forward (+)
HMPREF9534_RS01995GCF_000164315#HMPREF9534_RS01995
HKClassic
31 849-33 150 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000026245#EC55989_RS09150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905510
Simplified PFAM architecture for RROC_0905510
PFAM domain coverage: 185 / 239 aa (77.4%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[158-233]
- Domain count: 2
- Matched identifier: RROC_0905510
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 158-233 ; Trans_reg_C 158-233
Cluster members and taxonomy
Representative gene: GCF_000026245#EC55989_RS09150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 749 531 · GCF_000164315
AssemblyASM16431v1 · Scaffoldhaploid
Genome composition5 220 755 bp · 50,5% GCEscherichia coli MS 69-1
Signal transduction countsGenes 65 · HK 31 · RR 34CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key