1 Response_reg#1
4-113 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:4:1.2e-21:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EC55989_RS09150
Response regulator OmpR family
Escherichia coli 55989 · GCF_000026245
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000026245#EC55989_RS09150Stable P2CS identifier used across views.
GenomeGCF_000026245Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:157:3.67e-27:233:77:77- Raw architecture: Response_reg:4:1.2e-21:113:111:111#Trans_reg_C:157:3.67e-27:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000026245::NC_011748.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1831074-1833098Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEC55989_1774RefSeq proteinWP_001092504.1
Context group ID
GCF_000026245::NC_011748.1::G00011Context members
EC55989_RS09150EC55989_RS09155
Partner locus tags
EC55989_RS09150EC55989_RS09155
Partner old locus tags
EC55989_1774EC55989_1775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001092504.1Primary protein accession used for annex mappings.
UniProt accessionA0A0E0Y0A2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0E0Y0A2_ECO1CDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEC55989_RS09150Primary locus identifier stored in the genes table.
Old locus tagEC55989_1774Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_011748.1Sequence record reported by the local genomic context database.
Genomic interval1 831 074-1 831 793 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 831 074-1 833 098 ntGCF_000026245::NC_011748.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000026245::NC_011748.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_011748.1All displayed genes belong to this local TCS context.
Neighborhood span1 831 074-1 833 098 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 831 074 nt1 833 098 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EC55989_RS09150GCF_000026245#EC55989_RS09150
RROmpRCurrent focus
1 831 074-1 831 793 nt · Forward (+)
EC55989_RS09155GCF_000026245#EC55989_RS09155
HKClassic
1 831 797-1 833 098 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000026245#EC55989_RS09150The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905510
Simplified PFAM architecture for RROC_0905510
PFAM domain coverage: 185 / 239 aa (77.4%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[158-233]
- Domain count: 2
- Matched identifier: RROC_0905510
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 158-233 ; Trans_reg_C 158-233
Cluster members and taxonomy
Representative gene: GCF_000026245#EC55989_RS09150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 585 055 · GCF_000026245
AssemblyASM2624v1 · Complete Genomehaploid
Genome composition5 154 862 bp · 50,5% GCEscherichia coli 55989
Signal transduction countsGenes 63 · HK 30 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key