1 Response_reg#1
4-114 aa · 111 aa · 52.9% of protein
Raw token
Response_reg:4:1.05e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FAEPRAA2165_RS00565
Response regulator NarL family
Faecalibacterium duncaniae · GCF_000162015
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000162015#FAEPRAA2165_RS00565Stable P2CS identifier used across views.
GenomeGCF_000162015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 210 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
143-195 aa · 53 aa · 25.2% of protein
Raw token
HTH_LUXR:143:1.84e-18:195:53:58- Raw architecture: Response_reg:4:1.05e-22:114:111:111#HTH_LUXR:143:1.84e-18:195:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000162015::NZ_GG697149.2::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span117735-118367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFAEPRAA2165_00132RefSeq proteinWP_005928770.1
Context group ID
GCF_000162015::NZ_GG697149.2::G00032Context members
FAEPRAA2165_RS00565
Partner locus tags
FAEPRAA2165_RS00565
Partner old locus tags
FAEPRAA2165_00132
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005928770.1Primary protein accession used for annex mappings.
UniProt accessionC7H1J4Primary UniProt accession resolved in the annex database.
UniProt IDC7H1J4_FAED2Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFAEPRAA2165_RS00565Primary locus identifier stored in the genes table.
Old locus tagFAEPRAA2165_00132Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG697149.2Sequence record reported by the local genomic context database.
Genomic interval117 735-118 367 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 735-118 367 ntGCF_000162015::NZ_GG697149.2::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000162015::NZ_GG697149.2::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG697149.2All displayed genes belong to this local TCS context.
Neighborhood span117 735-118 367 nt633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 735 nt118 367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FAEPRAA2165_RS00565GCF_000162015#FAEPRAA2165_RS00565
RRNarLCurrent focus
117 735-118 367 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS00565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2019072
Simplified PFAM architecture for RROC_2019072
PFAM domain coverage: 166 / 210 aa (79.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[142-195]
- Domain count: 2
- Matched identifier: RROC_2019072
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 142-195 ; GerE 142-195
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS00565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 483 · GCF_000162015
AssemblyASM16201v1 · Scaffoldhaploid
Genome composition3 090 349 bp · 56,5% GCFaecalibacterium duncaniae
Signal transduction countsGenes 63 · HK 29 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key