1 Response_reg#1
5-114 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:5:3.42e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BTHUR0013_RS31355
Response regulator OmpR family
Bacillus thuringiensis IBL 200 · GCF_000161715
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161715#BTHUR0013_RS31355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.4% of protein
Raw token
Trans_reg_C:153:2.87e-36:229:77:77- Raw architecture: Response_reg:5:3.42e-37:114:111:111#Trans_reg_C:153:2.87e-36:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161715::NZ_CM000758.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6357441-6359547Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbthur0013_64120RefSeq proteinWP_000751022.1
Context group ID
GCF_000161715::NZ_CM000758.1::G00070Context members
BTHUR0013_RS31355BTHUR0013_RS31360
Partner locus tags
BTHUR0013_RS31355BTHUR0013_RS31360
Partner old locus tags
bthur0013_64120bthur0013_64130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000751022.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD5I939Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD5I939_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBTHUR0013_RS31355Primary locus identifier stored in the genes table.
Old locus tagbthur0013_64120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000758.1Sequence record reported by the local genomic context database.
Genomic interval6 357 441-6 358 157 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 357 441-6 359 547 ntGCF_000161715::NZ_CM000758.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161715::NZ_CM000758.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000758.1All displayed genes belong to this local TCS context.
Neighborhood span6 357 441-6 359 547 nt2 107 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 357 441 nt6 359 547 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BTHUR0013_RS31355GCF_000161715#BTHUR0013_RS31355
RROmpRCurrent focus
6 357 441-6 358 157 nt · Forward (+)
BTHUR0013_RS31360GCF_000161715#BTHUR0013_RS31360
HKClassic
6 358 147-6 359 547 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161715#BTHUR0013_RS31355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932610
Simplified PFAM architecture for RROC_0932610
PFAM domain coverage: 186 / 238 aa (78.2%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0932610
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000161715#BTHUR0013_RS31355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 527 019 · GCF_000161715
AssemblyASM16171v1 · Chromosomehaploid
Genome composition6 731 790 bp · 34,5% GCBacillus thuringiensis IBL 200
Signal transduction countsGenes 118 · HK 63 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key