1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:3.97e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0026_RS25720
Response regulator OmpR family
Bacillus mycoides · GCF_000161335
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161335#BCERE0026_RS25720Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:154:7.25e-35:229:76:77- Raw architecture: Response_reg:6:3.97e-39:115:111:111#Trans_reg_C:154:7.25e-35:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161335::NZ_CM000737.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5058158-5060704Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0026_51780RefSeq proteinWP_002089942.1
Context group ID
GCF_000161335::NZ_CM000737.1::G00066Context members
BCERE0026_RS25720BCERE0026_RS25725
Partner locus tags
BCERE0026_RS25720BCERE0026_RS25725
Partner old locus tags
bcere0026_51780bcere0026_51770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002089942.1Primary protein accession used for annex mappings.
UniProt accessionA0A1C4GDE5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1C4GDE5_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0026_RS25720Primary locus identifier stored in the genes table.
Old locus tagbcere0026_51780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000737.1Sequence record reported by the local genomic context database.
Genomic interval5 058 158-5 058 865 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 058 158-5 060 704 ntGCF_000161335::NZ_CM000737.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161335::NZ_CM000737.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000737.1All displayed genes belong to this local TCS context.
Neighborhood span5 058 158-5 060 704 nt2 547 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 058 158 nt5 060 704 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0026_RS25720GCF_000161335#BCERE0026_RS25720
RROmpRCurrent focus
5 058 158-5 058 865 nt · Forward (+)
BCERE0026_RS25725GCF_000161335#BCERE0026_RS25725
HKClassic
5 058 869-5 060 704 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS25720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016801
Simplified PFAM architecture for RROC_1016801
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1016801
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS25720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000161335
AssemblyASM16133v1 · Chromosomehaploid
Genome composition5 799 451 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 68 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key