1 Response_reg#1
4-107 aa · 104 aa · 40.8% of protein
Raw token
Response_reg:4:4.03e-25:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0026_RS01690
Response regulator, unclassified
Bacillus mycoides · GCF_000161335
ClassRRTypeunclassifiedLength255 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000161335#BCERE0026_RS01690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage104 / 255 aa (40.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:4.03e-25:107:106:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000161335::NZ_CM000737.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span312041-315744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0026_3090RefSeq proteinWP_016096990.1
Context group ID
GCF_000161335::NZ_CM000737.1::G00005Context members
BCERE0026_RS01690BCERE0026_RS01695
Partner locus tags
BCERE0026_RS01690BCERE0026_RS01695
Partner old locus tags
bcere0026_3090bcere0026_3100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016096990.1Primary protein accession used for annex mappings.
UniProt accessionR8CKT9Primary UniProt accession resolved in the annex database.
UniProt IDR8CKT9_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0026_RS01690Primary locus identifier stored in the genes table.
Old locus tagbcere0026_3090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000737.1Sequence record reported by the local genomic context database.
Genomic interval312 041-312 808 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span312 041-315 744 ntGCF_000161335::NZ_CM000737.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000161335::NZ_CM000737.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000737.1All displayed genes belong to this local TCS context.
Neighborhood span312 041-315 744 nt3 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
312 041 nt315 744 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCERE0026_RS01690GCF_000161335#BCERE0026_RS01690
RRunclassifiedCurrent focus
312 041-312 808 nt · Reverse (-)
BCERE0026_RS01695GCF_000161335#BCERE0026_RS01695
HKHybrid
312 796-315 744 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS01690The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0680104
Simplified PFAM architecture for RROC_0680104
PFAM domain coverage: 106 / 255 aa (41.6%)
1 aa255 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-109]
- Domain count: 1
- Matched identifier: RROC_0680104
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS01690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000161335
AssemblyASM16133v1 · Chromosomehaploid
Genome composition5 799 451 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 126 · HK 68 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key