1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:2.43e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0349_RS15100
Response regulator NarL family
Enterococcus faecalis TX1322 · GCF_000159275
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000159275#HMPREF0349_RS15100Stable P2CS identifier used across views.
GenomeGCF_000159275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:146:2.06e-25:203:58:58- Raw architecture: Response_reg:4:2.43e-25:116:113:111#HTH_LUXR:146:2.06e-25:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000159275::NZ_GG669020.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15294-17004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0349_2803RefSeq proteinWP_002385277.1
Context group ID
GCF_000159275::NZ_GG669020.1::G00003Context members
HMPREF0349_RS15100HMPREF0349_RS15105
Partner locus tags
HMPREF0349_RS15100HMPREF0349_RS15105
Partner old locus tags
HMPREF0349_2803HMPREF0349_2804
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002385277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0349_RS15100Primary locus identifier stored in the genes table.
Old locus tagHMPREF0349_2803Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG669020.1Sequence record reported by the local genomic context database.
Genomic interval15 294-15 926 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 294-17 004 ntGCF_000159275::NZ_GG669020.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159275::NZ_GG669020.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG669020.1All displayed genes belong to this local TCS context.
Neighborhood span15 294-17 004 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 294 nt17 004 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0349_RS15100GCF_000159275#HMPREF0349_RS15100
RRNarLCurrent focus
15 294-15 926 nt · Reverse (-)
HMPREF0349_RS15105GCF_000159275#HMPREF0349_RS15105
HKClassic
15 901-17 004 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148445#HMPREF9496_RS04060Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2019030
Simplified PFAM architecture for RROC_2019030
PFAM domain coverage: 168 / 210 aa (80.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-203]
- Domain count: 2
- Matched identifier: RROC_2019030
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-203 ; GerE 149-203
Cluster members and taxonomy
Representative gene: GCF_000148445#HMPREF9496_RS04060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 278 · GCF_000159275
AssemblyASM15927v1 · Scaffoldhaploid
Genome composition2 974 288 bp · 37,5% GCEnterococcus faecalis TX1322
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key