1 HAMP#1
288-360 aa · 73 aa · 12.7% of protein
Raw token
HAMP:288:0.0000000855:360:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0349_RS05840
Histidine kinase, Classic
Enterococcus faecalis TX1322 · GCF_000159275
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000159275#HMPREF0349_RS05840Stable P2CS identifier used across views.
GenomeGCF_000159275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 576 aa (45.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
375-453 aa · 79 aa · 13.7% of protein
Raw token
His_kinase:375:8.39e-28:453:80:803 HATPase_c#3
464-574 aa · 111 aa · 19.3% of protein
Raw token
HATPase_c:464:0.0000000000136:574:113:109- Raw architecture: HAMP:288:0.0000000855:360:73:69#His_kinase:375:8.39e-28:453:80:80#HATPase_c:464:0.0000000000136:574:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000159275::NZ_GG669017.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span481084-482814Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0349_0480RefSeq proteinWP_002356857.1
Context group ID
GCF_000159275::NZ_GG669017.1::G00009Context members
HMPREF0349_RS05840
Partner locus tags
HMPREF0349_RS05840
Partner old locus tags
HMPREF0349_0480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002356857.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9TIV0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9TIV0_ENTFLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0349_RS05840Primary locus identifier stored in the genes table.
Old locus tagHMPREF0349_0480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG669017.1Sequence record reported by the local genomic context database.
Genomic interval481 084-482 814 nt1 731 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span481 084-482 814 ntGCF_000159275::NZ_GG669017.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159275::NZ_GG669017.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG669017.1All displayed genes belong to this local TCS context.
Neighborhood span481 084-482 814 nt1 731 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
481 084 nt482 814 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0349_RS05840GCF_000159275#HMPREF0349_RS05840
HKClassicCurrent focus
481 084-482 814 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS15130Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1182884
Simplified PFAM architecture for HKOC_1182884
PFAM domain coverage: 180 / 576 aa (31.3%)
1 aa576 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[375-453] | HATPase_c[474-574]
- Domain count: 2
- Matched identifier: HKOC_1182884
- Positioned domains: His_kinase 375-453 ; HATPase_c 474-574
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS15130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 278 · GCF_000159275
AssemblyASM15927v1 · Scaffoldhaploid
Genome composition2 974 288 bp · 37,5% GCEnterococcus faecalis TX1322
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key