1 Response_reg#1
3-113 aa · 111 aa · 45.9% of protein
Raw token
Response_reg:3:2.56e-24:113:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0349_RS14135
Response regulator LytTR family
Enterococcus faecalis TX1322 · GCF_000159275
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000159275#HMPREF0349_RS14135Stable P2CS identifier used across views.
GenomeGCF_000159275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 242 aa (86.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-240 aa · 98 aa · 40.5% of protein
Raw token
LytTR:143:1.88e-39:240:98:98- Raw architecture: Response_reg:3:2.56e-24:113:113:111#LytTR:143:1.88e-39:240:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000159275::NZ_GG669019.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85453-87931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0349_2600RefSeq proteinWP_002385157.1
Context group ID
GCF_000159275::NZ_GG669019.1::G00005Context members
HMPREF0349_RS14130HMPREF0349_RS14135
Partner locus tags
HMPREF0349_RS14130HMPREF0349_RS14135
Partner old locus tags
HMPREF0349_2599HMPREF0349_2600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002385157.1Primary protein accession used for annex mappings.
UniProt accessionR3K6T3Primary UniProt accession resolved in the annex database.
UniProt IDR3K6T3_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0349_RS14135Primary locus identifier stored in the genes table.
Old locus tagHMPREF0349_2600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG669019.1Sequence record reported by the local genomic context database.
Genomic interval87 203-87 931 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 453-87 931 ntGCF_000159275::NZ_GG669019.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159275::NZ_GG669019.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG669019.1All displayed genes belong to this local TCS context.
Neighborhood span85 453-87 931 nt2 479 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 453 nt87 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0349_RS14130GCF_000159275#HMPREF0349_RS14130
HKClassic
85 453-87 192 nt · Forward (+)
HMPREF0349_RS14135GCF_000159275#HMPREF0349_RS14135
RRLytTRCurrent focus
87 203-87 931 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148445#HMPREF9496_RS14815Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0843602
Simplified PFAM architecture for RROC_0843602
PFAM domain coverage: 207 / 242 aa (85.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[143-239]
- Domain count: 2
- Matched identifier: RROC_0843602
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 143-239 ; LytTR 143-239
Cluster members and taxonomy
Representative gene: GCF_000148445#HMPREF9496_RS14815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 278 · GCF_000159275
AssemblyASM15927v1 · Scaffoldhaploid
Genome composition2 974 288 bp · 37,5% GCEnterococcus faecalis TX1322
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key