1 Response_reg#1
3-113 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:3:7.8e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0349_RS09730
Response regulator OmpR family
Enterococcus faecalis TX1322 · GCF_000159275
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000159275#HMPREF0349_RS09730Stable P2CS identifier used across views.
GenomeGCF_000159275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 239 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-233 aa · 70 aa · 29.3% of protein
Raw token
Trans_reg_C:164:5.97e-37:233:72:77- Raw architecture: Response_reg:3:7.8e-28:113:111:111#Trans_reg_C:164:5.97e-37:233:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000159275::NZ_GG669017.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1272296-1274484Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0349_1280RefSeq proteinWP_002384655.1
Context group ID
GCF_000159275::NZ_GG669017.1::G00013Context members
HMPREF0349_RS09725HMPREF0349_RS09730
Partner locus tags
HMPREF0349_RS09725HMPREF0349_RS09730
Partner old locus tags
HMPREF0349_1279HMPREF0349_1280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002384655.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0349_RS09730Primary locus identifier stored in the genes table.
Old locus tagHMPREF0349_1280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG669017.1Sequence record reported by the local genomic context database.
Genomic interval1 273 765-1 274 484 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 272 296-1 274 484 ntGCF_000159275::NZ_GG669017.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159275::NZ_GG669017.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG669017.1All displayed genes belong to this local TCS context.
Neighborhood span1 272 296-1 274 484 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 272 296 nt1 274 484 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0349_RS09725GCF_000159275#HMPREF0349_RS09725
HKClassic
1 272 296-1 273 765 nt · Reverse (-)
HMPREF0349_RS09730GCF_000159275#HMPREF0349_RS09730
RROmpRCurrent focus
1 273 765-1 274 484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148185#HMPREF9509_RS11310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905561
Simplified PFAM architecture for RROC_0905561
PFAM domain coverage: 182 / 239 aa (76.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[164-233]
- Domain count: 2
- Matched identifier: RROC_0905561
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 164-233 ; Trans_reg_C 164-233
Cluster members and taxonomy
Representative gene: GCF_000148185#HMPREF9509_RS11310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 278 · GCF_000159275
AssemblyASM15927v1 · Scaffoldhaploid
Genome composition2 974 288 bp · 37,5% GCEnterococcus faecalis TX1322
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key