1 H_kinase_N#1
9-147 aa · 139 aa · 29.1% of protein
Raw token
H_kinase_N:9:5.93e-37:147:140:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0349_RS08235
Histidine kinase, Classic
Enterococcus faecalis TX1322 · GCF_000159275
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000159275#HMPREF0349_RS08235Stable P2CS identifier used across views.
GenomeGCF_000159275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
H_kinase_NHisKA_2HATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 477 aa (63.5%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA_2#2
280-354 aa · 75 aa · 15.7% of protein
Raw token
HisKA_2:280:1.23e-27:354:76:763 HATPase_c#3
380-468 aa · 89 aa · 18.7% of protein
Raw token
HATPase_c:380:0.00000000017:468:105:109- Raw architecture: H_kinase_N:9:5.93e-37:147:140:139#HisKA_2:280:1.23e-27:354:76:76#HATPase_c:380:0.00000000017:468:105:109
- Domain description: 1 H_kinase_N,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000159275::NZ_GG669017.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span954569-956575Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0349_0973RefSeq proteinWP_002363989.1
Context group ID
GCF_000159275::NZ_GG669017.1::G00012Context members
HMPREF0349_RS08230HMPREF0349_RS08235
Partner locus tags
HMPREF0349_RS08230HMPREF0349_RS08235
Partner old locus tags
HMPREF0349_0972HMPREF0349_0973
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002363989.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0349_RS08235Primary locus identifier stored in the genes table.
Old locus tagHMPREF0349_0973Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG669017.1Sequence record reported by the local genomic context database.
Genomic interval955 142-956 575 nt1 434 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span954 569-956 575 ntGCF_000159275::NZ_GG669017.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000159275::NZ_GG669017.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG669017.1All displayed genes belong to this local TCS context.
Neighborhood span954 569-956 575 nt2 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
954 569 nt956 575 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0349_RS08230GCF_000159275#HMPREF0349_RS08230
RRAmiR_NasR
954 569-955 141 nt · Forward (+)
HMPREF0349_RS08235GCF_000159275#HMPREF0349_RS08235
HKClassicCurrent focus
955 142-956 575 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147905#HMPREF9500_RS05570Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + HisKA_2 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1645595
Simplified PFAM architecture for HKOC_1645595
PFAM domain coverage: 305 / 477 aa (63.9%)
1 aa477 aa
GAF_PdtaSHisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[4-146] | HisKA_2[280-352] | HATPase_c[380-468]
- Domain count: 3
- Matched identifier: HKOC_1645595
- Positioned domains: GAF_PdtaS 4-146 ; HisKA_2 280-352 ; HATPase_c 380-468
Cluster members and taxonomy
Representative gene: GCF_000147905#HMPREF9500_RS05570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 525 278 · GCF_000159275
AssemblyASM15927v1 · Scaffoldhaploid
Genome composition2 974 288 bp · 37,5% GCEnterococcus faecalis TX1322
Signal transduction countsGenes 27 · HK 13 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key