1 Response_reg#1
11-124 aa · 114 aa · 50.2% of protein
Raw token
Response_reg:11:4.64e-16:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFBRE_RS02480
Response regulator NarL family
Bifidobacterium breve DSM 20213 = JCM 1192 · GCF_000158015
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000158015#BIFBRE_RS02480Stable P2CS identifier used across views.
GenomeGCF_000158015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 227 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-221 aa · 58 aa · 25.6% of protein
Raw token
HTH_LUXR:164:1.05e-25:221:58:58- Raw architecture: Response_reg:11:4.64e-16:124:114:111#HTH_LUXR:164:1.05e-25:221:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000158015::NZ_GG729831.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span328738-329421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFBRE_04500RefSeq proteinWP_003829955.1
Context group ID
GCF_000158015::NZ_GG729831.1::G00002Context members
BIFBRE_RS02480
Partner locus tags
BIFBRE_RS02480
Partner old locus tags
BIFBRE_04500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829955.1Primary protein accession used for annex mappings.
UniProt accessionA0A0L7B038Primary UniProt accession resolved in the annex database.
UniProt IDA0A0L7B038_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFBRE_RS02480Primary locus identifier stored in the genes table.
Old locus tagBIFBRE_04500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG729831.1Sequence record reported by the local genomic context database.
Genomic interval328 738-329 421 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span328 738-329 421 ntGCF_000158015::NZ_GG729831.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000158015::NZ_GG729831.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG729831.1All displayed genes belong to this local TCS context.
Neighborhood span328 738-329 421 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 738 nt329 421 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BIFBRE_RS02480GCF_000158015#BIFBRE_RS02480
RRNarLCurrent focus
328 738-329 421 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS02480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354554
Simplified PFAM architecture for RROC_1354554
PFAM domain coverage: 169 / 227 aa (74.4%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[166-221]
- Domain count: 2
- Matched identifier: RROC_1354554
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 166-221 ; GerE 166-221
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS02480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 518 634 · GCF_000158015
AssemblyASM15801v1 · Scaffoldhaploid
Genome composition2 331 386 bp · 58,5% GCBifidobacterium breve DSM 20213 = JCM 1192
Signal transduction countsGenes 27 · HK 10 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key