1 HAMP#1
172-210 aa · 39 aa · 8.4% of protein
Raw token
HAMP:172:0.0000123:210:39:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SUBVAR_RS14765
Histidine kinase, Classic
Subdoligranulum variabile DSM 15176 · GCF_000157955
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157955#SUBVAR_RS14765Stable P2CS identifier used across views.
GenomeGCF_000157955Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Subdoligranulum
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage216 / 466 aa (46.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-302 aa · 66 aa · 14.2% of protein
Raw token
HisKA:237:1.52e-18:302:66:643 HATPase_c#3
355-465 aa · 111 aa · 23.8% of protein
Raw token
HATPase_c:355:2.62e-28:465:111:109- Raw architecture: HAMP:172:0.0000123:210:39:69#HisKA:237:1.52e-18:302:66:64#HATPase_c:355:2.62e-28:465:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157955::NZ_GG704771.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span357465-359550Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSUBVAR_07320RefSeq proteinWP_007048665.1
Context group ID
GCF_000157955::NZ_GG704771.1::G00002Context members
SUBVAR_RS14765SUBVAR_RS14770
Partner locus tags
SUBVAR_RS14765SUBVAR_RS14770
Partner old locus tags
SUBVAR_07320SUBVAR_07321
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007048665.1Primary protein accession used for annex mappings.
UniProt accessionD1PSD7Primary UniProt accession resolved in the annex database.
UniProt IDD1PSD7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSUBVAR_RS14765Primary locus identifier stored in the genes table.
Old locus tagSUBVAR_07320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG704771.1Sequence record reported by the local genomic context database.
Genomic interval357 465-358 865 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span357 465-359 550 ntGCF_000157955::NZ_GG704771.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157955::NZ_GG704771.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG704771.1All displayed genes belong to this local TCS context.
Neighborhood span357 465-359 550 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
357 465 nt359 550 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SUBVAR_RS14765GCF_000157955#SUBVAR_RS14765
HKClassicCurrent focus
357 465-358 865 nt · Reverse (-)
SUBVAR_RS14770GCF_000157955#SUBVAR_RS14770
RROmpR
358 858-359 550 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157955#SUBVAR_RS14765The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1761751
Simplified PFAM architecture for HKOC_1761751
PFAM domain coverage: 177 / 466 aa (38.0%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-302] | HATPase_c[355-465]
- Domain count: 2
- Matched identifier: HKOC_1761751
- Positioned domains: HisKA 237-302 ; HATPase_c 355-465
Cluster members and taxonomy
Representative gene: GCF_000157955#SUBVAR_RS14765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 471 · GCF_000157955
AssemblyASM15795v1 · Scaffoldhaploid
Genome composition3 245 471 bp · 58,0% GCSubdoligranulum variabile DSM 15176
Signal transduction countsGenes 59 · HK 27 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusSubdoligranulum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Subdoligranulum
Related genes
Preview from the same derived genome key