1 Response_reg#1
4-112 aa · 109 aa · 50.0% of protein
Raw token
Response_reg:4:6.19e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SUBVAR_RS01165
Response regulator OmpR family
Subdoligranulum variabile DSM 15176 · GCF_000157955
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157955#SUBVAR_RS01165Stable P2CS identifier used across views.
GenomeGCF_000157955Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Subdoligranulum
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 218 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-215 aa · 74 aa · 33.9% of protein
Raw token
Trans_reg_C:142:5.09e-27:215:78:77- Raw architecture: Response_reg:4:6.19e-36:112:111:111#Trans_reg_C:142:5.09e-27:215:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157955::NZ_GG704769.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span272767-274774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSUBVAR_04255RefSeq proteinWP_007045703.1
Context group ID
GCF_000157955::NZ_GG704769.1::G00016Context members
SUBVAR_RS01165SUBVAR_RS01170
Partner locus tags
SUBVAR_RS01165SUBVAR_RS01170
Partner old locus tags
SUBVAR_04255SUBVAR_04257
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007045703.1Primary protein accession used for annex mappings.
UniProt accessionD1PIU1Primary UniProt accession resolved in the annex database.
UniProt IDD1PIU1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSUBVAR_RS01165Primary locus identifier stored in the genes table.
Old locus tagSUBVAR_04255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG704769.1Sequence record reported by the local genomic context database.
Genomic interval272 767-273 423 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span272 767-274 774 ntGCF_000157955::NZ_GG704769.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157955::NZ_GG704769.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG704769.1All displayed genes belong to this local TCS context.
Neighborhood span272 767-274 774 nt2 008 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
272 767 nt274 774 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SUBVAR_RS01165GCF_000157955#SUBVAR_RS01165
RROmpRCurrent focus
272 767-273 423 nt · Forward (+)
SUBVAR_RS01170GCF_000157955#SUBVAR_RS01170
HKClassic
273 428-274 774 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157955#SUBVAR_RS01165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812299
Simplified PFAM architecture for RROC_1812299
PFAM domain coverage: 183 / 218 aa (83.9%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[142-215]
- Domain count: 2
- Matched identifier: RROC_1812299
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 142-215 ; Trans_reg_C 142-215
Cluster members and taxonomy
Representative gene: GCF_000157955#SUBVAR_RS01165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 471 · GCF_000157955
AssemblyASM15795v1 · Scaffoldhaploid
Genome composition3 245 471 bp · 58,0% GCSubdoligranulum variabile DSM 15176
Signal transduction countsGenes 59 · HK 27 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusSubdoligranulum
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Subdoligranulum
Related genes
Preview from the same derived genome key