1 Response_reg#1
3-111 aa · 109 aa · 50.0% of protein
Raw token
Response_reg:3:1.83e-36:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFRG_RS08355
Response regulator OmpR family
Enterococcus faecium 1,231,501 · GCF_000157555
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157555#EFRG_RS08355Stable P2CS identifier used across views.
GenomeGCF_000157555Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 218 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-216 aa · 73 aa · 33.5% of protein
Raw token
Trans_reg_C:144:4.68e-24:216:77:77- Raw architecture: Response_reg:3:1.83e-36:111:111:111#Trans_reg_C:144:4.68e-24:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157555::NZ_GG688436.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span519523-521564Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFRG_00498RefSeq proteinWP_002302578.1
Context group ID
GCF_000157555::NZ_GG688436.1::G00017Context members
EFRG_RS08355EFRG_RS08360
Partner locus tags
EFRG_RS08355EFRG_RS08360
Partner old locus tags
EFRG_00498EFRG_00499
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002302578.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X1GAT1Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X1GAT1_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFRG_RS08355Primary locus identifier stored in the genes table.
Old locus tagEFRG_00498Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688436.1Sequence record reported by the local genomic context database.
Genomic interval519 523-520 179 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span519 523-521 564 ntGCF_000157555::NZ_GG688436.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157555::NZ_GG688436.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688436.1All displayed genes belong to this local TCS context.
Neighborhood span519 523-521 564 nt2 042 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
519 523 nt521 564 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFRG_RS08355GCF_000157555#EFRG_RS08355
RROmpRCurrent focus
519 523-520 179 nt · Forward (+)
EFRG_RS08360GCF_000157555#EFRG_RS08360
HKClassic
520 176-521 564 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157555#EFRG_RS08355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812295
Simplified PFAM architecture for RROC_1812295
PFAM domain coverage: 181 / 218 aa (83.0%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1812295
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000157555#EFRG_RS08355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 658 · GCF_000157555
AssemblyASM15755v1 · Scaffoldhaploid
Genome composition2 871 230 bp · 38,0% GCEnterococcus faecium 1,231,501
Signal transduction countsGenes 41 · HK 19 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key