1 HisKA_3#1
172-235 aa · 64 aa · 17.8% of protein
Raw token
HisKA_3:172:5.94e-16:235:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFQG_RS13065
Histidine kinase, Classic
Enterococcus faecium 1,231,502 · GCF_000157535
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000157535#EFQG_RS13065Stable P2CS identifier used across views.
GenomeGCF_000157535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 359 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
275-356 aa · 82 aa · 22.8% of protein
Raw token
HATPase_c:275:0.000000242:356:100:109- Raw architecture: HisKA_3:172:5.94e-16:235:66:68#HATPase_c:275:0.000000242:356:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000157535::NZ_GG688489.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span70745-71854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFQG_01316RefSeq proteinWP_002317394.1
Context group ID
GCF_000157535::NZ_GG688489.1::G00013Context members
EFQG_RS13065
Partner locus tags
EFQG_RS13065
Partner old locus tags
EFQG_01316
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002317394.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3GYF7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3GYF7_ENTFCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFQG_RS13065Primary locus identifier stored in the genes table.
Old locus tagEFQG_01316Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG688489.1Sequence record reported by the local genomic context database.
Genomic interval70 745-71 854 nt1 110 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 745-71 854 ntGCF_000157535::NZ_GG688489.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157535::NZ_GG688489.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG688489.1All displayed genes belong to this local TCS context.
Neighborhood span70 745-71 854 nt1 110 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 745 nt71 854 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFQG_RS13065GCF_000157535#EFQG_RS13065
HKClassicCurrent focus
70 745-71 854 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172675#EFME1162_RS10350Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c_52 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2691252
Simplified PFAM architecture for HKOC_2691252
PFAM domain coverage: 150 / 369 aa (40.7%)
1 aa369 aa
HisKA_3HATPase_c_5
- Simplified architecture: HisKA_3 + HATPase_c_5
- Raw architecture: HisKA_3[182-245] | HATPase_c_5[279-364]
- Domain count: 2
- Matched identifier: HKOC_2691252
- Positioned domains: HisKA_3 182-245 ; HATPase_c_5 279-364
Cluster members and taxonomy
Representative gene: GCF_000172675#EFME1162_RS10350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 657 · GCF_000157535
AssemblyASM15753v1 · Scaffoldhaploid
Genome composition3 084 930 bp · 37,5% GCEnterococcus faecium 1,231,502
Signal transduction countsGenes 41 · HK 20 · RR 21CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key