1 HAMP#1
163-228 aa · 66 aa · 14.4% of protein
Raw token
HAMP:163:0.0000000115:228:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFKG_RS12020
Histidine kinase, Classic
Enterococcus faecalis Fly1 · GCF_000157415
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157415#EFKG_RS12020Stable P2CS identifier used across views.
GenomeGCF_000157415Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 458 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
240-303 aa · 64 aa · 14.0% of protein
Raw token
HisKA:240:0.00000000819:303:64:643 HATPase_c#3
351-456 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:351:3.9e-16:456:107:109- Raw architecture: HAMP:163:0.0000000115:228:66:69#HisKA:240:0.00000000819:303:64:64#HATPase_c:351:3.9e-16:456:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157415::NZ_GG692670.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span426114-428166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFKG_00407RefSeq proteinWP_002376804.1
Context group ID
GCF_000157415::NZ_GG692670.1::G00001Context members
EFKG_RS12015EFKG_RS12020
Partner locus tags
EFKG_RS12015EFKG_RS12020
Partner old locus tags
EFKG_00406EFKG_00407
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002376804.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFKG_RS12020Primary locus identifier stored in the genes table.
Old locus tagEFKG_00407Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692670.1Sequence record reported by the local genomic context database.
Genomic interval426 790-428 166 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span426 114-428 166 ntGCF_000157415::NZ_GG692670.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157415::NZ_GG692670.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692670.1All displayed genes belong to this local TCS context.
Neighborhood span426 114-428 166 nt2 053 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
426 114 nt428 166 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFKG_RS12015GCF_000157415#EFKG_RS12015
RROmpR
426 114-426 800 nt · Forward (+)
EFKG_RS12020GCF_000157415#EFKG_RS12020
HKClassicCurrent focus
426 790-428 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157415#EFKG_RS12020The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1858396
Simplified PFAM architecture for HKOC_1858396
PFAM domain coverage: 219 / 458 aa (47.8%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-227] | HisKA[240-302] | HATPase_c[351-456]
- Domain count: 3
- Matched identifier: HKOC_1858396
- Positioned domains: HAMP 178-227 ; HisKA 240-302 ; HATPase_c 351-456
Cluster members and taxonomy
Representative gene: GCF_000157415#EFKG_RS12020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 649 · GCF_000157415
AssemblyASM15741v1 · Scaffoldhaploid
Genome composition2 834 288 bp · 37,5% GCEnterococcus faecalis Fly1
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key