1 Response_reg#1
4-112 aa · 109 aa · 47.8% of protein
Raw token
Response_reg:4:1.04e-25:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFKG_RS12015
Response regulator OmpR family
Enterococcus faecalis Fly1 · GCF_000157415
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157415#EFKG_RS12015Stable P2CS identifier used across views.
GenomeGCF_000157415Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-222 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:146:1.04e-21:222:77:77- Raw architecture: Response_reg:4:1.04e-25:112:111:111#Trans_reg_C:146:1.04e-21:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157415::NZ_GG692670.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span426114-428166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFKG_00406RefSeq proteinWP_002376801.1
Context group ID
GCF_000157415::NZ_GG692670.1::G00001Context members
EFKG_RS12015EFKG_RS12020
Partner locus tags
EFKG_RS12015EFKG_RS12020
Partner old locus tags
EFKG_00406EFKG_00407
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002376801.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFKG_RS12015Primary locus identifier stored in the genes table.
Old locus tagEFKG_00406Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692670.1Sequence record reported by the local genomic context database.
Genomic interval426 114-426 800 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span426 114-428 166 ntGCF_000157415::NZ_GG692670.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157415::NZ_GG692670.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692670.1All displayed genes belong to this local TCS context.
Neighborhood span426 114-428 166 nt2 053 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
426 114 nt428 166 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFKG_RS12015GCF_000157415#EFKG_RS12015
RROmpRCurrent focus
426 114-426 800 nt · Forward (+)
EFKG_RS12020GCF_000157415#EFKG_RS12020
HKClassic
426 790-428 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157415#EFKG_RS12015The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302160
Simplified PFAM architecture for RROC_1302160
PFAM domain coverage: 179 / 228 aa (78.5%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[151-221]
- Domain count: 2
- Matched identifier: RROC_1302160
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 151-221 ; Trans_reg_C 151-221
Cluster members and taxonomy
Representative gene: GCF_000157415#EFKG_RS12015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 649 · GCF_000157415
AssemblyASM15741v1 · Scaffoldhaploid
Genome composition2 834 288 bp · 37,5% GCEnterococcus faecalis Fly1
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key