1 HisKA_3#1
155-224 aa · 70 aa · 19.1% of protein
Raw token
HisKA_3:155:3.4e-21:224:70:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFJG_RS08440
Histidine kinase, Classic
Enterococcus faecalis E1Sol · GCF_000157395
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000157395#EFJG_RS08440Stable P2CS identifier used across views.
GenomeGCF_000157395Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 367 aa (44.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
262-353 aa · 92 aa · 25.1% of protein
Raw token
HATPase_c:262:1.1e-18:353:105:109- Raw architecture: HisKA_3:155:3.4e-21:224:70:68#HATPase_c:262:1.1e-18:353:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000157395::NZ_GG692673.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span426791-428501Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFJG_02395RefSeq proteinWP_002373101.1
Context group ID
GCF_000157395::NZ_GG692673.1::G00016Context members
EFJG_RS08440EFJG_RS08445
Partner locus tags
EFJG_RS08440EFJG_RS08445
Partner old locus tags
EFJG_02395EFJG_02396
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002373101.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFJG_RS08440Primary locus identifier stored in the genes table.
Old locus tagEFJG_02395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692673.1Sequence record reported by the local genomic context database.
Genomic interval426 791-427 894 nt1 104 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span426 791-428 501 ntGCF_000157395::NZ_GG692673.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157395::NZ_GG692673.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692673.1All displayed genes belong to this local TCS context.
Neighborhood span426 791-428 501 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
426 791 nt428 501 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFJG_RS08440GCF_000157395#EFJG_RS08440
HKClassicCurrent focus
426 791-427 894 nt · Forward (+)
EFJG_RS08445GCF_000157395#EFJG_RS08445
RRNarL
427 869-428 501 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157395#EFJG_RS08440The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2705363
Simplified PFAM architecture for HKOC_2705363
PFAM domain coverage: 161 / 367 aa (43.9%)
1 aa367 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[155-223] | HATPase_c[262-353]
- Domain count: 2
- Matched identifier: HKOC_2705363
- Positioned domains: HisKA_3 155-223 ; HATPase_c 262-353
Cluster members and taxonomy
Representative gene: GCF_000157395#EFJG_RS08440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 647 · GCF_000157395
AssemblyASM15739v1 · Scaffoldhaploid
Genome composition2 881 904 bp · 37,5% GCEnterococcus faecalis E1Sol
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key