1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:1.12e-28:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFHG_RS17950
Response regulator OmpR family
Enterococcus faecalis HIP11704 · GCF_000157335
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000157335#EFHG_RS17950Stable P2CS identifier used across views.
GenomeGCF_000157335Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:1.18e-22:214:78:77- Raw architecture: Response_reg:3:1.12e-28:111:111:111#Trans_reg_C:142:1.18e-22:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000157335::NZ_GG692656.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span141680-142333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFHG_00150RefSeq proteinWP_002285815.1
Context group ID
GCF_000157335::NZ_GG692656.1::G00002Context members
EFHG_RS17950
Partner locus tags
EFHG_RS17950
Partner old locus tags
EFHG_00150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002285815.1Primary protein accession used for annex mappings.
UniProt accessionQ3Y3Y4Primary UniProt accession resolved in the annex database.
UniProt IDQ3Y3Y4_ENTFDDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFHG_RS17950Primary locus identifier stored in the genes table.
Old locus tagEFHG_00150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692656.1Sequence record reported by the local genomic context database.
Genomic interval141 680-142 333 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span141 680-142 333 ntGCF_000157335::NZ_GG692656.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157335::NZ_GG692656.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692656.1All displayed genes belong to this local TCS context.
Neighborhood span141 680-142 333 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
141 680 nt142 333 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFHG_RS17950GCF_000157335#EFHG_RS17950
RROmpRCurrent focus
141 680-142 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS08945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847442
Simplified PFAM architecture for RROC_1847442
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1847442
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 142-214 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS08945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 646 · GCF_000157335
AssemblyASM15733v1 · Scaffoldhaploid
Genome composition3 202 994 bp · 37,0% GCEnterococcus faecalis HIP11704
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key