1 Response_reg#1
4-122 aa · 119 aa · 49.8% of protein
Raw token
Response_reg:4:4.63e-16:122:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFHG_RS08430
Response regulator LytTR family
Enterococcus faecalis HIP11704 · GCF_000157335
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000157335#EFHG_RS08430Stable P2CS identifier used across views.
GenomeGCF_000157335Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 239 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-239 aa · 90 aa · 37.7% of protein
Raw token
LytTR:150:1.13e-20:239:95:98- Raw architecture: Response_reg:4:4.63e-16:122:120:111#LytTR:150:1.13e-20:239:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000157335::NZ_GG692638.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span231357-232076Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFHG_02145RefSeq proteinWP_002388606.1
Context group ID
GCF_000157335::NZ_GG692638.1::G00015Context members
EFHG_RS08430
Partner locus tags
EFHG_RS08430
Partner old locus tags
EFHG_02145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002388606.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFHG_RS08430Primary locus identifier stored in the genes table.
Old locus tagEFHG_02145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692638.1Sequence record reported by the local genomic context database.
Genomic interval231 357-232 076 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 357-232 076 ntGCF_000157335::NZ_GG692638.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000157335::NZ_GG692638.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692638.1All displayed genes belong to this local TCS context.
Neighborhood span231 357-232 076 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 357 nt232 076 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFHG_RS08430GCF_000157335#EFHG_RS08430
RRLytTRCurrent focus
231 357-232 076 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147255#HMPREF9511_RS17380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905556
Simplified PFAM architecture for RROC_0905556
PFAM domain coverage: 208 / 239 aa (87.0%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[151-239]
- Domain count: 2
- Matched identifier: RROC_0905556
- Positioned domains: Response_reg 4-122 ; Response_reg 4-122 ; LytTR 151-239 ; LytTR 151-239
Cluster members and taxonomy
Representative gene: GCF_000147255#HMPREF9511_RS17380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 565 646 · GCF_000157335
AssemblyASM15733v1 · Scaffoldhaploid
Genome composition3 202 994 bp · 37,0% GCEnterococcus faecalis HIP11704
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key