1 HisKA#1
562-628 aa · 67 aa · 8.5% of protein
Raw token
HisKA:562:7.84e-17:628:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS21360
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength785 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS21360Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length785 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 785 aa (22.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa785 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
674-780 aa · 107 aa · 13.6% of protein
Raw token
HATPase_c:674:1.13e-16:780:112:109- Raw architecture: HisKA:562:7.84e-17:628:67:64#HATPase_c:674:1.13e-16:780:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692743.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span32630-35660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_08733RefSeq proteinWP_006858800.1
Context group ID
GCF_000156535::NZ_GG692743.1::G00020Context members
ROSINTL182_RS21360ROSINTL182_RS16605
Partner locus tags
ROSINTL182_RS21360ROSINTL182_RS16605
Partner old locus tags
ROSINTL182_08733ROSINTL182_08734
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006858800.1Primary protein accession used for annex mappings.
UniProt accessionC7GFM6Primary UniProt accession resolved in the annex database.
UniProt IDC7GFM6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS21360Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_08733Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692743.1Sequence record reported by the local genomic context database.
Genomic interval32 630-34 987 nt2 358 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span32 630-35 660 ntGCF_000156535::NZ_GG692743.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692743.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692743.1All displayed genes belong to this local TCS context.
Neighborhood span32 630-35 660 nt3 031 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
32 630 nt35 660 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS21360GCF_000156535#ROSINTL182_RS21360
HKClassicCurrent focus
32 630-34 987 nt · Reverse (-)
ROSINTL182_RS16605GCF_000156535#ROSINTL182_RS16605
RROmpR
34 956-35 660 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS21360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0582807
Simplified PFAM architecture for HKOC_0582807
PFAM domain coverage: 159 / 785 aa (20.3%)
1 aa785 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[563-627] | HATPase_c[675-768]
- Domain count: 2
- Matched identifier: HKOC_0582807
- Positioned domains: HisKA 563-627 ; HATPase_c 675-768
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS21360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key