1 HisKA#1
547-613 aa · 67 aa · 8.8% of protein
Raw token
HisKA:547:1.83e-16:613:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS21195
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength764 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS21195Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length764 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 764 aa (20.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa764 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
665-752 aa · 88 aa · 11.5% of protein
Raw token
HATPase_c:665:0.00000000000876:752:92:109- Raw architecture: HisKA:547:1.83e-16:613:67:64#HATPase_c:665:0.00000000000876:752:92:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692718.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75551-78524Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_06369RefSeq proteinWP_006856499.1
Context group ID
GCF_000156535::NZ_GG692718.1::G00054Context members
ROSINTL182_RS21195ROSINTL182_RS06120
Partner locus tags
ROSINTL182_RS21195ROSINTL182_RS06120
Partner old locus tags
ROSINTL182_06369ROSINTL182_06370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006856499.1Primary protein accession used for annex mappings.
UniProt accessionC7G8Z3Primary UniProt accession resolved in the annex database.
UniProt IDC7G8Z3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS21195Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_06369Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692718.1Sequence record reported by the local genomic context database.
Genomic interval75 551-77 845 nt2 295 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 551-78 524 ntGCF_000156535::NZ_GG692718.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692718.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692718.1All displayed genes belong to this local TCS context.
Neighborhood span75 551-78 524 nt2 974 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 551 nt78 524 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS21195GCF_000156535#ROSINTL182_RS21195
HKClassicCurrent focus
75 551-77 845 nt · Reverse (-)
ROSINTL182_RS06120GCF_000156535#ROSINTL182_RS06120
RROmpR
77 817-78 524 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS21195The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0633581
Simplified PFAM architecture for HKOC_0633581
PFAM domain coverage: 158 / 764 aa (20.7%)
1 aa764 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[547-612] | HATPase_c[661-752]
- Domain count: 2
- Matched identifier: HKOC_0633581
- Positioned domains: HisKA 547-612 ; HATPase_c 661-752
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS21195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key