1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:1.86e-17:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS18600
Response regulator LytTR family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS18600Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 236 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-230 aa · 85 aa · 36.0% of protein
Raw token
LytTR:146:1.97e-22:230:91:98- Raw architecture: Response_reg:4:1.86e-17:112:113:111#LytTR:146:1.97e-22:230:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692755.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17220-17930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_09174RefSeq proteinWP_006859240.1
Context group ID
GCF_000156535::NZ_GG692755.1::G00008Context members
ROSINTL182_RS18600
Partner locus tags
ROSINTL182_RS18600
Partner old locus tags
ROSINTL182_09174
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006859240.1Primary protein accession used for annex mappings.
UniProt accessionC7GGV2Primary UniProt accession resolved in the annex database.
UniProt IDC7GGV2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS18600Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_09174Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692755.1Sequence record reported by the local genomic context database.
Genomic interval17 220-17 930 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 220-17 930 ntGCF_000156535::NZ_GG692755.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692755.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692755.1All displayed genes belong to this local TCS context.
Neighborhood span17 220-17 930 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 220 nt17 930 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS18600GCF_000156535#ROSINTL182_RS18600
RRLytTRCurrent focus
17 220-17 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS18600The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988523
Simplified PFAM architecture for RROC_0988523
PFAM domain coverage: 198 / 236 aa (83.9%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[144-229]
- Domain count: 2
- Matched identifier: RROC_0988523
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 144-229 ; LytTR 144-229
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS18600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key