1 Response_reg#1
11-124 aa · 114 aa · 20.7% of protein
Raw token
Response_reg:11:4.04e-33:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS17730
Response regulator, unclassified
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeunclassifiedLength551 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS17730Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length551 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 551 aa (35.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa551 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
447-489 aa · 43 aa · 7.8% of protein
Raw token
HTH_AraC:447:0.00000000103:489:43:423 HTH_AraC#3
502-539 aa · 38 aa · 6.9% of protein
Raw token
HTH_AraC:502:0.0000000317:539:38:42- Raw architecture: Response_reg:11:4.04e-33:124:114:111#HTH_AraC:447:0.00000000103:489:43:42#HTH_AraC:502:0.0000000317:539:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692750.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1874-4962Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_08979RefSeq proteinWP_408638721.1
Context group ID
GCF_000156535::NZ_GG692750.1::G00012Context members
ROSINTL182_RS17725ROSINTL182_RS17730
Partner locus tags
ROSINTL182_RS17725ROSINTL182_RS17730
Partner old locus tags
ROSINTL182_08978ROSINTL182_08979
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_408638721.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS17730Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_08979Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692750.1Sequence record reported by the local genomic context database.
Genomic interval3 328-4 962 nt1 635 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 874-4 962 ntGCF_000156535::NZ_GG692750.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692750.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692750.1All displayed genes belong to this local TCS context.
Neighborhood span1 874-4 962 nt3 089 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 874 nt4 962 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS17725GCF_000156535#ROSINTL182_RS17725
HKClassic
1 874-3 331 nt · Reverse (-)
ROSINTL182_RS17730GCF_000156535#ROSINTL182_RS17730
RRunclassifiedCurrent focus
3 328-4 962 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS17730The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0072524
Simplified PFAM architecture for RROC_0072524
PFAM domain coverage: 193 / 551 aa (35.0%)
1 aa551 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[11-124] | HTH_18[462-540]
- Domain count: 2
- Matched identifier: RROC_0072524
- Positioned domains: Response_reg 11-124 ; Response_reg 11-124 ; HTH_18 462-540 ; HTH_18 462-540
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS17730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key