1 HisKA#1
43-108 aa · 66 aa · 15.7% of protein
Raw token
HisKA:43:0.000000000000106:108:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS17265
Histidine kinase, Hybrid
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeHybridLength421 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS17265Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 421 aa (71.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
155-271 aa · 117 aa · 27.8% of protein
Raw token
HATPase_c:155:9.05e-29:271:117:1093 Response_reg#3
297-413 aa · 117 aa · 27.8% of protein
Raw token
Response_reg:297:8.01e-29:413:117:111- Raw architecture: HisKA:43:0.000000000000106:108:66:64#HATPase_c:155:9.05e-29:271:117:109#Response_reg:297:8.01e-29:413:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692747.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9318-10583Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_08877RefSeq proteinWP_006858962.1
Context group ID
GCF_000156535::NZ_GG692747.1::G00016Context members
ROSINTL182_RS17265
Partner locus tags
ROSINTL182_RS17265
Partner old locus tags
ROSINTL182_08877
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006858962.1Primary protein accession used for annex mappings.
UniProt accessionC7GG17Primary UniProt accession resolved in the annex database.
UniProt IDC7GG17_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS17265Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_08877Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692747.1Sequence record reported by the local genomic context database.
Genomic interval9 318-10 583 nt1 266 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 318-10 583 ntGCF_000156535::NZ_GG692747.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692747.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692747.1All displayed genes belong to this local TCS context.
Neighborhood span9 318-10 583 nt1 266 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 318 nt10 583 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS17265GCF_000156535#ROSINTL182_RS17265
HKHybridCurrent focus
9 318-10 583 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS17265The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2256695
Simplified PFAM architecture for HKOC_2256695
PFAM domain coverage: 297 / 421 aa (70.5%)
1 aa421 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[43-108] | HATPase_c[155-269] | Response_reg[297-412]
- Domain count: 3
- Matched identifier: HKOC_2256695
- Positioned domains: HisKA 43-108 ; HATPase_c 155-269 ; Response_reg 297-412
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS17265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key