1 Response_reg#1
10-121 aa · 112 aa · 21.1% of protein
Raw token
Response_reg:10:2.25e-26:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS16585
Response regulator, unclassified
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS16585Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 532 aa (28.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
487-524 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:487:0.00000000112:524:38:42- Raw architecture: Response_reg:10:2.25e-26:121:112:111#HTH_AraC:487:0.00000000112:524:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692743.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26981-28579Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_08728RefSeq proteinWP_006858797.1
Context group ID
GCF_000156535::NZ_GG692743.1::G00018Context members
ROSINTL182_RS16585
Partner locus tags
ROSINTL182_RS16585
Partner old locus tags
ROSINTL182_08728
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006858797.1Primary protein accession used for annex mappings.
UniProt accessionC7GFM2Primary UniProt accession resolved in the annex database.
UniProt IDC7GFM2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS16585Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_08728Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692743.1Sequence record reported by the local genomic context database.
Genomic interval26 981-28 579 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 981-28 579 ntGCF_000156535::NZ_GG692743.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692743.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692743.1All displayed genes belong to this local TCS context.
Neighborhood span26 981-28 579 nt1 599 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 981 nt28 579 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS16585GCF_000156535#ROSINTL182_RS16585
RRunclassifiedCurrent focus
26 981-28 579 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS16585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107824
Simplified PFAM architecture for RROC_0107824
PFAM domain coverage: 312 / 532 aa (58.6%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[10-121] | GGDEF_2[170-291] | HTH_18[447-524]
- Domain count: 3
- Matched identifier: RROC_0107824
- Positioned domains: Response_reg 10-121 ; Response_reg 10-121 ; GGDEF_2 170-291 ; GGDEF_2 170-291 ; HTH_18 447-524 ; HTH_18 447-524
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS16585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key