1 HisKA#1
28-97 aa · 70 aa · 28.1% of protein
Raw token
HisKA:28:0.00000000215:97:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS15990
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS15990Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 249 aa (69.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
143-244 aa · 102 aa · 41.0% of protein
Raw token
HATPase_c:143:7.68e-24:244:103:109- Raw architecture: HisKA:28:0.00000000215:97:70:64#HATPase_c:143:7.68e-24:244:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692740.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span39915-40709Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_08595RefSeq proteinWP_242655627.1
Context group ID
GCF_000156535::NZ_GG692740.1::G00022Context members
ROSINTL182_RS15990
Partner locus tags
ROSINTL182_RS15990
Partner old locus tags
ROSINTL182_08595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242655627.1Primary protein accession used for annex mappings.
UniProt accessionA0AAQ2UB85Primary UniProt accession resolved in the annex database.
UniProt IDA0AAQ2UB85_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS15990Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_08595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692740.1Sequence record reported by the local genomic context database.
Genomic interval39 915-40 709 nt795 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 915-40 709 ntGCF_000156535::NZ_GG692740.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692740.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692740.1All displayed genes belong to this local TCS context.
Neighborhood span39 915-40 709 nt795 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 915 nt40 709 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS15990GCF_000156535#ROSINTL182_RS15990
HKClassicCurrent focus
39 915-40 709 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537305#LIP70_RS06975Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2066064
Simplified PFAM architecture for HKOC_2066064
PFAM domain coverage: 217 / 441 aa (49.2%)
1 aa441 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[160-205] | HisKA[221-288] | HATPase_c[335-437]
- Domain count: 3
- Matched identifier: HKOC_2066064
- Positioned domains: HAMP 160-205 ; HisKA 221-288 ; HATPase_c 335-437
Cluster members and taxonomy
Representative gene: GCF_020537305#LIP70_RS06975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key