1 Response_reg#1
8-118 aa · 111 aa · 88.8% of protein
Raw token
Response_reg:8:1.48e-23:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS13185
Response regulator, CheY family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeCheYLength125 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS13185Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length125 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 125 aa (88.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa125 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:8:1.48e-23:118:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692730.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34792-35169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07965RefSeq proteinWP_006858027.1
Context group ID
GCF_000156535::NZ_GG692730.1::G00035Context members
ROSINTL182_RS13185
Partner locus tags
ROSINTL182_RS13185
Partner old locus tags
ROSINTL182_07965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006858027.1Primary protein accession used for annex mappings.
UniProt accessionD4KXQ1Primary UniProt accession resolved in the annex database.
UniProt IDD4KXQ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS13185Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692730.1Sequence record reported by the local genomic context database.
Genomic interval34 792-35 169 nt378 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 792-35 169 ntGCF_000156535::NZ_GG692730.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692730.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692730.1All displayed genes belong to this local TCS context.
Neighborhood span34 792-35 169 nt378 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 792 nt35 169 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS13185GCF_000156535#ROSINTL182_RS13185
RRCheYCurrent focus
34 792-35 169 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS13185The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2369322
Simplified PFAM architecture for RROC_2369322
PFAM domain coverage: 111 / 125 aa (88.8%)
1 aa125 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[8-118]
- Domain count: 1
- Matched identifier: RROC_2369322
- Positioned domains: Response_reg 8-118 ; Response_reg 8-118
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS13185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key