1 HAMP#1
228-295 aa · 68 aa · 13.0% of protein
Raw token
HAMP:228:0.0000000000000331:295:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS13170
Histidine kinase, Classic
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeClassicLength525 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS13170Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length525 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 525 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa525 aa
Domain-by-domain annotation3 items
2 HisKA#2
302-368 aa · 67 aa · 12.8% of protein
Raw token
HisKA:302:2.01e-18:368:67:643 HATPase_c#3
413-525 aa · 113 aa · 21.5% of protein
Raw token
HATPase_c:413:3.22e-27:525:113:109- Raw architecture: HAMP:228:0.0000000000000331:295:69:69#HisKA:302:2.01e-18:368:67:64#HATPase_c:413:3.22e-27:525:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692730.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31909-34150Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07961RefSeq proteinWP_006858024.1
Context group ID
GCF_000156535::NZ_GG692730.1::G00034Context members
ROSINTL182_RS13170ROSINTL182_RS13175
Partner locus tags
ROSINTL182_RS13170ROSINTL182_RS13175
Partner old locus tags
ROSINTL182_07961ROSINTL182_07962
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006858024.1Primary protein accession used for annex mappings.
UniProt accessionC7GDG0Primary UniProt accession resolved in the annex database.
UniProt IDC7GDG0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS13170Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07961Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692730.1Sequence record reported by the local genomic context database.
Genomic interval31 909-33 486 nt1 578 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 909-34 150 ntGCF_000156535::NZ_GG692730.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692730.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692730.1All displayed genes belong to this local TCS context.
Neighborhood span31 909-34 150 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 909 nt34 150 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS13170GCF_000156535#ROSINTL182_RS13170
HKClassicCurrent focus
31 909-33 486 nt · Reverse (-)
ROSINTL182_RS13175GCF_000156535#ROSINTL182_RS13175
RROmpR
33 476-34 150 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS13170The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1373660
Simplified PFAM architecture for HKOC_1373660
PFAM domain coverage: 220 / 525 aa (41.9%)
1 aa525 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[245-295] | HisKA[302-359] | HATPase_c[414-524]
- Domain count: 3
- Matched identifier: HKOC_1373660
- Positioned domains: HAMP 245-295 ; HisKA 302-359 ; HATPase_c 414-524
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS13170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key