1 Response_reg#1
33-118 aa · 86 aa · 43.2% of protein
Raw token
Response_reg:33:0.00000000000000162:118:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS12965
Response regulator LytTR family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeLytTRLength199 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156535#ROSINTL182_RS12965Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length199 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 199 aa (72.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa199 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-194 aa · 58 aa · 29.1% of protein
Raw token
LytTR:137:0.000000483:194:58:98- Raw architecture: Response_reg:33:0.00000000000000162:118:88:111#LytTR:137:0.000000483:194:58:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156535::NZ_GG692729.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span85177-85776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07914RefSeq proteinWP_006857973.1
Context group ID
GCF_000156535::NZ_GG692729.1::G00036Context members
ROSINTL182_RS12965
Partner locus tags
ROSINTL182_RS12965
Partner old locus tags
ROSINTL182_07914
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006857973.1Primary protein accession used for annex mappings.
UniProt accessionA0A173VXD3Primary UniProt accession resolved in the annex database.
UniProt IDA0A173VXD3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS12965Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07914Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692729.1Sequence record reported by the local genomic context database.
Genomic interval85 177-85 776 nt600 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 177-85 776 ntGCF_000156535::NZ_GG692729.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692729.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692729.1All displayed genes belong to this local TCS context.
Neighborhood span85 177-85 776 nt600 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 177 nt85 776 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROSINTL182_RS12965GCF_000156535#ROSINTL182_RS12965
RRLytTRCurrent focus
85 177-85 776 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS12965The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2143489
Simplified PFAM architecture for RROC_2143489
PFAM domain coverage: 155 / 199 aa (77.9%)
1 aa199 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[20-118] | LytTR[139-194]
- Domain count: 2
- Matched identifier: RROC_2143489
- Positioned domains: Response_reg 20-118 ; Response_reg 20-118 ; LytTR 139-194 ; LytTR 139-194
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS12965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key