1 Response_reg#1
5-116 aa · 112 aa · 52.6% of protein
Raw token
Response_reg:5:6.43e-35:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS11810
Response regulator NarL family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS11810Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 213 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-205 aa · 57 aa · 26.8% of protein
Raw token
HTH_LUXR:149:6.8e-25:205:57:58- Raw architecture: Response_reg:5:6.43e-35:116:112:111#HTH_LUXR:149:6.8e-25:205:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692727.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34998-36659Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07655RefSeq proteinWP_006857746.1
Context group ID
GCF_000156535::NZ_GG692727.1::G00037Context members
ROSINTL182_RS11805ROSINTL182_RS11810
Partner locus tags
ROSINTL182_RS11805ROSINTL182_RS11810
Partner old locus tags
ROSINTL182_07654ROSINTL182_07655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006857746.1Primary protein accession used for annex mappings.
UniProt accessionC7GCL7Primary UniProt accession resolved in the annex database.
UniProt IDC7GCL7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS11810Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692727.1Sequence record reported by the local genomic context database.
Genomic interval36 018-36 659 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 998-36 659 ntGCF_000156535::NZ_GG692727.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692727.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692727.1All displayed genes belong to this local TCS context.
Neighborhood span34 998-36 659 nt1 662 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 998 nt36 659 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS11805GCF_000156535#ROSINTL182_RS11805
HKClassic
34 998-36 002 nt · Forward (+)
ROSINTL182_RS11810GCF_000156535#ROSINTL182_RS11810
RRNarLCurrent focus
36 018-36 659 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS11810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962692
Simplified PFAM architecture for RROC_1962692
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[149-205]
- Domain count: 2
- Matched identifier: RROC_1962692
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 149-205 ; GerE 149-205
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS11810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key