1 Response_reg#1
5-113 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:5:9.25e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS11115
Response regulator OmpR family
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS11115Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:147:3.56e-25:222:77:77- Raw architecture: Response_reg:5:9.25e-36:113:111:111#Trans_reg_C:147:3.56e-25:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692725.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114613-116609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07499RefSeq proteinWP_020994080.1
Context group ID
GCF_000156535::NZ_GG692725.1::G00043Context members
ROSINTL182_RS11110ROSINTL182_RS11115
Partner locus tags
ROSINTL182_RS11110ROSINTL182_RS11115
Partner old locus tags
ROSINTL182_07498ROSINTL182_07499
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020994080.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4W5D9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4W5D9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS11115Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07499Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692725.1Sequence record reported by the local genomic context database.
Genomic interval115 935-116 609 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span114 613-116 609 ntGCF_000156535::NZ_GG692725.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692725.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692725.1All displayed genes belong to this local TCS context.
Neighborhood span114 613-116 609 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 613 nt116 609 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS11110GCF_000156535#ROSINTL182_RS11110
HKClassic
114 613-115 947 nt · Reverse (-)
ROSINTL182_RS11115GCF_000156535#ROSINTL182_RS11115
RROmpRCurrent focus
115 935-116 609 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS11115The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529136
Simplified PFAM architecture for RROC_1529136
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1529136
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS11115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key