1 Response_reg#1
4-116 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:4:1.1e-20:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS10350
Response regulator, unclassified
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS10350Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 534 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
435-475 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:435:0.0000408:475:41:423 HTH_AraC#3
490-526 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:490:0.000000798:526:37:42- Raw architecture: Response_reg:4:1.1e-20:116:113:111#HTH_AraC:435:0.0000408:475:41:42#HTH_AraC:490:0.000000798:526:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692724.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107099-110430Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07328RefSeq proteinWP_006857415.1
Context group ID
GCF_000156535::NZ_GG692724.1::G00045Context members
ROSINTL182_RS10350ROSINTL182_RS10355
Partner locus tags
ROSINTL182_RS10350ROSINTL182_RS10355
Partner old locus tags
ROSINTL182_07328ROSINTL182_07329
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006857415.1Primary protein accession used for annex mappings.
UniProt accessionC7GBP3Primary UniProt accession resolved in the annex database.
UniProt IDC7GBP3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS10350Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07328Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692724.1Sequence record reported by the local genomic context database.
Genomic interval107 099-108 703 nt1 605 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 099-110 430 ntGCF_000156535::NZ_GG692724.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692724.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692724.1All displayed genes belong to this local TCS context.
Neighborhood span107 099-110 430 nt3 332 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 099 nt110 430 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS10350GCF_000156535#ROSINTL182_RS10350
RRunclassifiedCurrent focus
107 099-108 703 nt · Reverse (-)
ROSINTL182_RS10355GCF_000156535#ROSINTL182_RS10355
HKClassic
108 700-110 430 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS10350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0102883
Simplified PFAM architecture for RROC_0102883
PFAM domain coverage: 191 / 534 aa (35.8%)
1 aa534 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0102883
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS10350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key