1 Response_reg#1
107-218 aa · 112 aa · 49.6% of protein
Raw token
Response_reg:107:6.41e-21:218:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS10330
Response regulator, unclassified
Roseburia intestinalis L1-82 · GCF_000156535
ClassRRTypeunclassifiedLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156535#ROSINTL182_RS10330Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 226 aa (49.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:107:6.41e-21:218:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156535::NZ_GG692724.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101010-104188Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07324RefSeq proteinWP_134523452.1
Context group ID
GCF_000156535::NZ_GG692724.1::G00044Context members
ROSINTL182_RS10330ROSINTL182_RS10335
Partner locus tags
ROSINTL182_RS10330ROSINTL182_RS10335
Partner old locus tags
ROSINTL182_07324ROSINTL182_07325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_134523452.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS10330Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07324Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692724.1Sequence record reported by the local genomic context database.
Genomic interval101 010-101 690 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span101 010-104 188 ntGCF_000156535::NZ_GG692724.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692724.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692724.1All displayed genes belong to this local TCS context.
Neighborhood span101 010-104 188 nt3 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 010 nt104 188 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROSINTL182_RS10330GCF_000156535#ROSINTL182_RS10330
RRunclassifiedCurrent focus
101 010-101 690 nt · Reverse (-)
ROSINTL182_RS10335GCF_000156535#ROSINTL182_RS10335
HKUnorthodox
101 585-104 188 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS10330The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1408516
Simplified PFAM architecture for RROC_1408516
PFAM domain coverage: 111 / 226 aa (49.1%)
1 aa226 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[107-217]
- Domain count: 1
- Matched identifier: RROC_1408516
- Positioned domains: Response_reg 107-217 ; Response_reg 107-217
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS10330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key