1 HisKA#1
181-245 aa · 65 aa · 7.2% of protein
Raw token
HisKA:181:0.0000000000000316:245:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROSINTL182_RS09265
Histidine kinase, Unorthodox
Roseburia intestinalis L1-82 · GCF_000156535
ClassHKTypeUnorthodoxLength898 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000156535#ROSINTL182_RS09265Stable P2CS identifier used across views.
GenomeGCF_000156535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 898 aa (39.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
293-405 aa · 113 aa · 12.6% of protein
Raw token
HATPase_c:293:4.18e-25:405:113:1093 Response_reg#3
561-675 aa · 115 aa · 12.8% of protein
Raw token
Response_reg:561:1.14e-20:675:115:1114 Hpt#4
735-798 aa · 64 aa · 7.1% of protein
Raw token
Hpt:735:0.00000000497:798:64:84- Raw architecture: HisKA:181:0.0000000000000316:245:65:64#HATPase_c:293:4.18e-25:405:113:109#Response_reg:561:1.14e-20:675:115:111#Hpt:735:0.00000000497:798:64:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000156535::NZ_GG692723.1::G00046
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span5397-11825Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROSINTL182_07087RefSeq proteinWP_242655565.1
Context group ID
GCF_000156535::NZ_GG692723.1::G00046Context members
ROSINTL182_RS09260ROSINTL182_RS09265ROSINTL182_RS09270
Partner locus tags
ROSINTL182_RS09260ROSINTL182_RS09265ROSINTL182_RS09270
Partner old locus tags
ROSINTL182_07086ROSINTL182_07087ROSINTL182_07088
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242655565.1Primary protein accession used for annex mappings.
UniProt accessionA0AAQ2UBL9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAQ2UBL9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROSINTL182_RS09265Primary locus identifier stored in the genes table.
Old locus tagROSINTL182_07087Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG692723.1Sequence record reported by the local genomic context database.
Genomic interval6 461-9 157 nt2 697 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 397-11 825 ntGCF_000156535::NZ_GG692723.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156535::NZ_GG692723.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG692723.1All displayed genes belong to this local TCS context.
Neighborhood span5 397-11 825 nt6 429 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 397 nt11 825 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ROSINTL182_RS09260GCF_000156535#ROSINTL182_RS09260
RRRpfG
5 397-6 449 nt · Forward (+)
ROSINTL182_RS09265GCF_000156535#ROSINTL182_RS09265
HKUnorthodoxCurrent focus
6 461-9 157 nt · Forward (+)
ROSINTL182_RS09270GCF_000156535#ROSINTL182_RS09270
HKHybrid
9 150-11 825 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS09265The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0408848
Simplified PFAM architecture for HKOC_0408848
PFAM domain coverage: 354 / 898 aa (39.4%)
1 aa898 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[181-245] | HATPase_c[293-406] | Response_reg[561-672] | Hpt[735-797]
- Domain count: 4
- Matched identifier: HKOC_0408848
- Positioned domains: HisKA 181-245 ; HATPase_c 293-406 ; Response_reg 561-672 ; Hpt 735-797
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS09265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 231 · GCF_000156535
AssemblyASM15653v1 · Scaffoldhaploid
Genome composition4 411 375 bp · 42,5% GCRoseburia intestinalis L1-82
Signal transduction countsGenes 112 · HK 51 · RR 58CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key